Literature DB >> 20154108

Census of the viral metagenome within an activated sludge microbial assemblage.

Larissa C Parsley1, Erin J Consuegra, Stephen J Thomas, Jaysheel Bhavsar, Andrew M Land, Nadia N Bhuiyan, Mustafa A Mazher, Robert J Waters, K Eric Wommack, Willie F Harper, Mark R Liles.   

Abstract

The viral metagenome within an activated sludge microbial assemblage was sampled using culture-dependent and culture-independent methods and compared to the diversity of activated sludge bacterial taxa. A total of 70 unique cultured bacterial isolates, 24 cultured bacteriophages, 829 bacterial metagenomic clones of 16S rRNA genes, and 1,161 viral metagenomic clones were subjected to a phylogenetic analysis.

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Year:  2010        PMID： 20154108      PMCID： PMC2849206          DOI： 10.1128/AEM.02520-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  18 in total

1.  Genomic analysis of uncultured marine viral communities.

Authors:  Mya Breitbart; Peter Salamon; Bjarne Andresen; Joseph M Mahaffy; Anca M Segall; David Mead; Farooq Azam; Forest Rohwer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-16       Impact factor: 11.205

2.  Bacteriophages isolated from activated sludge processes and their polyvalency.

Authors:  Munawwar Ali Khan; Hiroyasu Satoh; Hirozuki Katayama; Futoshi Kurisu; Takashi Mino
Journal:  Water Res       Date:  2002-07       Impact factor: 11.236

Review 3.  Bacteriophages--potential for application in wastewater treatment processes.

Authors:  S Withey; E Cartmell; L M Avery; T Stephenson
Journal:  Sci Total Environ       Date:  2005-03-01       Impact factor: 7.963

4.  Molecular characterization of TEM-type beta-lactamases identified in cold-seep sediments of Edison Seamount (south of Lihir Island, Papua New Guinea).

Authors:  Jae Seok Song; Jeong Ho Jeon; Jung Hun Lee; Seok Hoon Jeong; Byeong Chul Jeong; Sang-Jin Kim; Jung-Hyun Lee; Sang Hee Lee
Journal:  J Microbiol       Date:  2005-04       Impact factor: 3.422

5.  Ecology of bacteriophages infecting activated sludge bacteria.

Authors:  J Hantula; A Kurki; P Vuoriranta; D H Bamford
Journal:  Appl Environ Microbiol       Date:  1991-08       Impact factor: 4.792

6.  Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses.

Authors:  D J Lane; B Pace; G J Olsen; D A Stahl; M L Sogin; N R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  1985-10       Impact factor: 11.205

7.  Bacteriophage predation regulates microbial abundance and diversity in a full-scale bioreactor treating industrial wastewater.

Authors:  Orr H Shapiro; Ariel Kushmaro; Asher Brenner
Journal:  ISME J       Date:  2009-11-19       Impact factor: 10.302

8.  Hydrogen-dependent denitrification in an alternating anoxic-aerobic SBR membrane bioreactor.

Authors:  B Rezania; J A Oleszkiewicz; N Cicek; H Mo
Journal:  Water Sci Technol       Date:  2005       Impact factor: 1.915

9.  Evaluation of an Escherichia coli host strain for enumeration of F male-specific bacteriophages.

Authors:  J Debartolomeis; V J Cabelli
Journal:  Appl Environ Microbiol       Date:  1991-05       Impact factor: 4.792

10.  PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information.

Authors:  Florent Angly; Beltran Rodriguez-Brito; David Bangor; Pat McNairnie; Mya Breitbart; Peter Salamon; Ben Felts; James Nulton; Joseph Mahaffy; Forest Rohwer
Journal:  BMC Bioinformatics       Date:  2005-03-02       Impact factor: 3.169
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  20 in total

1.  Identification of diverse antimicrobial resistance determinants carried on bacterial, plasmid, or viral metagenomes from an activated sludge microbial assemblage.

Authors:  Larissa C Parsley; Erin J Consuegra; Kavita S Kakirde; Andrew M Land; Willie F Harper; Mark R Liles
Journal:  Appl Environ Microbiol       Date:  2010-04-09       Impact factor: 4.792

2.  Metagenomic analysis of the viral communities in fermented foods.

Authors:  Eun-Jin Park; Kyoung-Ho Kim; Guy C J Abell; Min-Soo Kim; Seong Woon Roh; Jin-Woo Bae
Journal:  Appl Environ Microbiol       Date:  2010-12-23       Impact factor: 4.792

3.  Extent and variation of phage-borne bacterial 16S rRNA gene sequences in wastewater environments.

Authors:  Antonio Del Casale; Paul V Flanagan; Michael J Larkin; Christopher C R Allen; Leonid A Kulakov
Journal:  Appl Environ Microbiol       Date:  2011-06-10       Impact factor: 4.792

4.  High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage.

Authors:  Terry Fei Fan Ng; Rachel Marine; Chunlin Wang; Peter Simmonds; Beatrix Kapusinszky; Ladaporn Bodhidatta; Bamidele Soji Oderinde; K Eric Wommack; Eric Delwart
Journal:  J Virol       Date:  2012-08-29       Impact factor: 5.103

5.  An Insight into Phage Diversity at Environmental Habitats using Comparative Metagenomics Approach.

Authors:  Krupa Parmar; Nishant Dafale; Rajesh Pal; Hitesh Tikariha; Hemant Purohit
Journal:  Curr Microbiol       Date:  2017-09-19       Impact factor: 2.188

6.  Metagenomic analysis of kimchi, a traditional Korean fermented food.

Authors:  Ji Young Jung; Se Hee Lee; Jeong Myeong Kim; Moon Su Park; Jin-Woo Bae; Yoonsoo Hahn; Eugene L Madsen; Che Ok Jeon
Journal:  Appl Environ Microbiol       Date:  2011-02-11       Impact factor: 4.792

7.  Kimchi bacteriophages of lactic acid bacteria: population, characteristics, and their role in watery kimchi.

Authors:  Won-Jeong Park; Se-Jin Kong; Jong-Hyun Park
Journal:  Food Sci Biotechnol       Date:  2021-07-06       Impact factor: 3.231

8.  Real-time quantitative PCR to discriminate and quantify lambdoid bacteriophages of Escherichia coli K-12.

Authors:  Dominik Refardt
Journal:  Bacteriophage       Date:  2012-04-01

9.  Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d'Ivoire.

Authors:  Christiane Essoh; Libera Latino; Cédric Midoux; Yann Blouin; Guillaume Loukou; Simon-Pierre A Nguetta; Serge Lathro; Arsher Cablanmian; Athanase K Kouassi; Gilles Vergnaud; Christine Pourcel
Journal:  PLoS One       Date:  2015-06-26       Impact factor: 3.240

10.  A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes.

Authors:  Bhakti Dwivedi; Bingjie Xue; Daniel Lundin; Robert A Edwards; Mya Breitbart
Journal:  BMC Evol Biol       Date:  2013-02-07       Impact factor: 3.260
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