Literature DB >> 21666016

Extent and variation of phage-borne bacterial 16S rRNA gene sequences in wastewater environments.

Antonio Del Casale1, Paul V Flanagan, Michael J Larkin, Christopher C R Allen, Leonid A Kulakov.   

Abstract

Phage metagenomes isolated from wastewater over a 12-month period were analyzed. The results suggested that various strains of Proteobacteria, Bacteroidetes, and other phyla are likely to participate in transduction. The patterns of 16S rRNA sequences found in phage metagenomes did not follow changes in the total bacterial community.

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Year:  2011        PMID： 21666016      PMCID： PMC3147481          DOI： 10.1128/AEM.00457-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  17 in total

1.  Method for host-independent detection of generalized transducing bacteriophages in natural habitats.

Authors:  M Sander; H Schmieger
Journal:  Appl Environ Microbiol       Date:  2001-04       Impact factor: 4.792

Review 2.  Bacterial community composition and function in sewage treatment systems.

Authors:  Michael Wagner; Alexander Loy
Journal:  Curr Opin Biotechnol       Date:  2002-06       Impact factor: 9.740

3.  A broad-host-range, generalized transducing phage (SN-T) acquires 16S rRNA genes from different genera of bacteria.

Authors:  Amy Beumer; Jayne B Robinson
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

4.  Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA.

Authors:  G Muyzer; E C de Waal; A G Uitterlinden
Journal:  Appl Environ Microbiol       Date:  1993-03       Impact factor: 4.792

5.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

6.  Phylogenetic analysis and in situ identification of bacteria in activated sludge.

Authors:  J Snaidr; R Amann; I Huber; W Ludwig; K H Schleifer
Journal:  Appl Environ Microbiol       Date:  1997-07       Impact factor: 4.792

7.  Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis.

Authors:  R M Myers; S G Fischer; L S Lerman; T Maniatis
Journal:  Nucleic Acids Res       Date:  1985-05-10       Impact factor: 16.971

8.  Bacterial community structures in MBRs treating municipal wastewater: relationship between community stability and reactor performance.

Authors:  Yuki Miura; Mirian Noriko Hiraiwa; Tsukasa Ito; Takanori Itonaga; Yoshimasa Watanabe; Satoshi Okabe
Journal:  Water Res       Date:  2006-12-20       Impact factor: 11.236

9.  Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

Authors:  K Tamura; M Nei
Journal:  Mol Biol Evol       Date:  1993-05       Impact factor: 16.240

10.  Antibiotic resistance genes in the bacteriophage DNA fraction of environmental samples.

Authors:  Marta Colomer-Lluch; Juan Jofre; Maite Muniesa
Journal:  PLoS One       Date:  2011-03-03       Impact factor: 3.240
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  3 in total

Review 1.  Gene transfer agents: phage-like elements of genetic exchange.

Authors:  Andrew S Lang; Olga Zhaxybayeva; J Thomas Beatty
Journal:  Nat Rev Microbiol       Date:  2012-06-11       Impact factor: 60.633

2.  Risk of Bacteriophage Therapeutics to Transfer Genetic Material and Contain Contaminants Beyond Endotoxins with Clinically Relevant Mitigation Strategies.

Authors:  James B Doub
Journal:  Infect Drug Resist       Date:  2021-12-23       Impact factor: 4.003

3.  Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara.

Authors:  Laura Fancello; Sébatien Trape; Catherine Robert; Mickaël Boyer; Nikolay Popgeorgiev; Didier Raoult; Christelle Desnues
Journal:  ISME J       Date:  2012-10-04       Impact factor: 10.302
  3 in total

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