Literature DB >> 20382816

Identification of diverse antimicrobial resistance determinants carried on bacterial, plasmid, or viral metagenomes from an activated sludge microbial assemblage.

Larissa C Parsley1, Erin J Consuegra, Kavita S Kakirde, Andrew M Land, Willie F Harper, Mark R Liles.   

Abstract

Using both sequence- and function-based metagenomic approaches, multiple antibiotic resistance determinants were identified within metagenomic libraries constructed from DNA extracted from bacterial chromosomes, plasmids, or viruses within an activated sludge microbial assemblage. Metagenomic clones and a plasmid that in Escherichia coli expressed resistance to chloramphenicol, ampicillin, or kanamycin were isolated, with many cloned DNA sequences lacking any significant homology to known antibiotic resistance determinants.

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Year:  2010        PMID： 20382816      PMCID： PMC2876469          DOI： 10.1128/AEM.03080-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  15 in total

1.  Detection of clinically relevant antibiotic-resistance genes in municipal wastewater using real-time PCR (TaqMan).

Authors:  Holger Volkmann; Thomas Schwartz; Petra Bischoff; Silke Kirchen; Ursula Obst
Journal:  J Microbiol Methods       Date:  2004-02       Impact factor: 2.363

2.  Molecular characterization of TEM-type beta-lactamases identified in cold-seep sediments of Edison Seamount (south of Lihir Island, Papua New Guinea).

Authors:  Jae Seok Song; Jeong Ho Jeon; Jung Hun Lee; Seok Hoon Jeong; Byeong Chul Jeong; Sang-Jin Kim; Jung-Hyun Lee; Sang Hee Lee
Journal:  J Microbiol       Date:  2005-04       Impact factor: 3.422

3.  Antibiotic resistance of bacteria in raw and biologically treated sewage and in groundwater below leaking sewers.

Authors:  C Gallert; K Fund; J Winter
Journal:  Appl Microbiol Biotechnol       Date:  2005-10-20       Impact factor: 4.813

4.  Census of the viral metagenome within an activated sludge microbial assemblage.

Authors:  Larissa C Parsley; Erin J Consuegra; Stephen J Thomas; Jaysheel Bhavsar; Andrew M Land; Nadia N Bhuiyan; Mustafa A Mazher; Robert J Waters; K Eric Wommack; Willie F Harper; Mark R Liles
Journal:  Appl Environ Microbiol       Date:  2010-02-12       Impact factor: 4.792

5.  Characterization of chloramphenicol and florfenicol resistance in Escherichia coli associated with bovine diarrhea.

Authors:  D G White; C Hudson; J J Maurer; S Ayers; S Zhao; M D Lee; L Bolton; T Foley; J Sherwood
Journal:  J Clin Microbiol       Date:  2000-12       Impact factor: 5.948

6.  Distribution of ammonia-oxidizing bacteria in sewage activated sludge: analysis based on 16S rDNA sequence.

Authors:  T Limpiyakorn; Y Shinohara; F Kurisu; O Yagi
Journal:  Water Sci Technol       Date:  2004       Impact factor: 1.915

7.  Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system.

Authors:  Rafael Szczepanowski; Irene Krahn; Burkhard Linke; Alexander Goesmann; Alfred Pühler; Andreas Schlüter
Journal:  Microbiology       Date:  2004-11       Impact factor: 2.777

8.  Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors.

Authors:  P L Bond; P Hugenholtz; J Keller; L L Blackall
Journal:  Appl Environ Microbiol       Date:  1995-05       Impact factor: 4.792

9.  Abundance and phylogenetic affiliation of iron reducers in activated sludge as assessed by fluorescence in situ hybridization and microautoradiography.

Authors:  Jeppe Lund Nielsen; Stefan Juretschko; Michael Wagner; Per Halkjaer Nielsen
Journal:  Appl Environ Microbiol       Date:  2002-09       Impact factor: 4.792

Review 10.  The microbiology of biological phosphorus removal in activated sludge systems.

Authors:  Robert J Seviour; Takashi Mino; Motoharu Onuki
Journal:  FEMS Microbiol Rev       Date:  2003-04       Impact factor: 16.408
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  38 in total

1.  Size Does Matter: Application-driven Approaches for Soil Metagenomics.

Authors:  Kavita S Kakirde; Larissa C Parsley; Mark R Liles
Journal:  Soil Biol Biochem       Date:  2010-11-01       Impact factor: 7.609

2.  Mining for Nonribosomal Peptide Synthetase and Polyketide Synthase Genes Revealed a High Level of Diversity in the Sphagnum Bog Metagenome.

Authors:  Christina A Müller; Lisa Oberauner-Wappis; Armin Peyman; Gregory C A Amos; Elizabeth M H Wellington; Gabriele Berg
Journal:  Appl Environ Microbiol       Date:  2015-05-22       Impact factor: 4.792

Review 3.  What is a resistance gene? Ranking risk in resistomes.

Authors:  José L Martínez; Teresa M Coque; Fernando Baquero
Journal:  Nat Rev Microbiol       Date:  2014-12-15       Impact factor: 60.633

4.  Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology.

Authors:  Molly K Gibson; Kevin J Forsberg; Gautam Dantas
Journal:  ISME J       Date:  2014-07-08       Impact factor: 10.302

5.  Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses.

Authors:  François Enault; Arnaud Briet; Léa Bouteille; Simon Roux; Matthew B Sullivan; Marie-Agnès Petit
Journal:  ISME J       Date:  2016-06-21       Impact factor: 10.302

Review 6.  Functional Metagenomics as a Tool for Identification of New Antibiotic Resistance Genes from Natural Environments.

Authors:  Débora Farage Knupp Dos Santos; Paula Istvan; Betania Ferraz Quirino; Ricardo Henrique Kruger
Journal:  Microb Ecol       Date:  2016-10-05       Impact factor: 4.552

7.  Removal of antibiotic resistance genes in an algal-based wastewater treatment system employing Galdieria sulphuraria: A comparative study.

Authors:  Xiaoxiao Cheng; Himali M K Delanka-Pedige; Srimali P Munasinghe-Arachchige; Isuru S A Abeysiriwardana-Arachchige; Geoffrey B Smith; Nagamany Nirmalakhandan; Yanyan Zhang
Journal:  Sci Total Environ       Date:  2019-09-12       Impact factor: 7.963

8.  Metagenomic analysis of kimchi, a traditional Korean fermented food.

Authors:  Ji Young Jung; Se Hee Lee; Jeong Myeong Kim; Moon Su Park; Jin-Woo Bae; Yoonsoo Hahn; Eugene L Madsen; Che Ok Jeon
Journal:  Appl Environ Microbiol       Date:  2011-02-11       Impact factor: 4.792

9.  Abundance of Antibiotic Resistance Genes in Bacteriophage following Soil Fertilization with Dairy Manure or Municipal Biosolids, and Evidence for Potential Transduction.

Authors:  Joseph Ross; Edward Topp
Journal:  Appl Environ Microbiol       Date:  2015-09-04       Impact factor: 4.792

Review 10.  Cracking the Challenge of Antimicrobial Drug Resistance with CRISPR/Cas9, Nanotechnology and Other Strategies in ESKAPE Pathogens.

Authors:  Tanzeel Zohra; Muhammad Numan; Aamer Ikram; Muhammad Salman; Tariq Khan; Misbahud Din; Muhammad Salman; Ayesha Farooq; Afreenish Amir; Muhammad Ali
Journal:  Microorganisms       Date:  2021-04-29
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