Literature DB >> 20153831

Rapid purification of helicase proteins and in vitro analysis of helicase activity.

Kambiz Tahmaseb1, Steven W Matson.   

Abstract

Most processes involving an organism's genetic material, including replication, repair and recombination, require access to single-stranded DNA as a template or reaction intermediate. To disrupt the hydrogen bonds between the two strands in double-stranded DNA, organisms utilize proteins called DNA helicases. DNA helicases use duplex DNA as a substrate to create single-stranded DNA in a reaction that requires ATP hydrolysis. Due to their critical role in cellular function, understanding the reaction catalyzed by helicases is essential to understanding DNA metabolism. Helicases are also important in many disease processes due to their role in DNA maintenance and replication. Here we discuss ways to rapidly purify helicases in sufficient quantity for biochemical analysis. We also briefly discuss potential substrates to use with helicases to establish some of their critical biochemical parameters. Through the use of methods that simplify the study of helicases, our understanding of these essential proteins can be accelerated. Copyright (c) 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20153831      PMCID: PMC2892732          DOI: 10.1016/j.ymeth.2010.02.008

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  47 in total

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Authors:  Errol C Friedberg; Andres Aguilera; Martin Gellert; Philip C Hanawalt; John B Hays; Alan R Lehmann; Tomas Lindahl; Noel Lowndes; Alain Sarasin; Richard D Wood
Journal:  DNA Repair (Amst)       Date:  2006-08-13

2.  DNA unwinding by Escherichia coli DNA helicase I (TraI) provides evidence for a processive monomeric molecular motor.

Authors:  Bartek Sikora; Robert L Eoff; Steven W Matson; Kevin D Raney
Journal:  J Biol Chem       Date:  2006-09-19       Impact factor: 5.157

Review 3.  Biochemical, biophysical, and proteomic approaches to study DNA helicases.

Authors:  Alessandro Vindigni
Journal:  Mol Biosyst       Date:  2007-02-13

Review 4.  RNA helicases--one fold for many functions.

Authors:  Eckhard Jankowsky; Margaret E Fairman
Journal:  Curr Opin Struct Biol       Date:  2007-06-15       Impact factor: 6.809

Review 5.  Structure and mechanism of helicases and nucleic acid translocases.

Authors:  Martin R Singleton; Mark S Dillingham; Dale B Wigley
Journal:  Annu Rev Biochem       Date:  2007       Impact factor: 23.643

6.  XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations.

Authors:  Li Fan; Jill O Fuss; Quen J Cheng; Andrew S Arvai; Michal Hammel; Victoria A Roberts; Priscilla K Cooper; John A Tainer
Journal:  Cell       Date:  2008-05-30       Impact factor: 41.582

7.  Structure of the DNA repair helicase XPD.

Authors:  Huanting Liu; Jana Rudolf; Kenneth A Johnson; Stephen A McMahon; Muse Oke; Lester Carter; Anne-Marie McRobbie; Sara E Brown; James H Naismith; Malcolm F White
Journal:  Cell       Date:  2008-05-30       Impact factor: 41.582

Review 8.  The versatile RECQL4.

Authors:  Richard Kellermayer
Journal:  Genet Med       Date:  2006-04       Impact factor: 8.822

9.  Unwinding of forked DNA structures by UvrD.

Authors:  Chris J Cadman; Steven W Matson; Peter McGlynn
Journal:  J Mol Biol       Date:  2006-06-30       Impact factor: 5.469

Review 10.  Human premature aging, DNA repair and RecQ helicases.

Authors:  Robert M Brosh; Vilhelm A Bohr
Journal:  Nucleic Acids Res       Date:  2007-11-15       Impact factor: 16.971

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  2 in total

1.  The UvrD303 hyper-helicase exhibits increased processivity.

Authors:  Matthew J Meiners; Kambiz Tahmaseb; Steven W Matson
Journal:  J Biol Chem       Date:  2014-05-05       Impact factor: 5.157

Review 2.  Insight into the biochemical mechanism of DNA helicases provided by bulk-phase and single-molecule assays.

Authors:  Piero R Bianco
Journal:  Methods       Date:  2021-12-08       Impact factor: 4.647

  2 in total

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