Literature DB >> 16984922

DNA unwinding by Escherichia coli DNA helicase I (TraI) provides evidence for a processive monomeric molecular motor.

Bartek Sikora1, Robert L Eoff, Steven W Matson, Kevin D Raney.   

Abstract

The F plasmid TraI protein (DNA helicase I) plays an essential role in conjugative DNA transfer as both a transesterase and a helicase. Previous work has shown that the 192-kDa TraI protein is a highly processive helicase, catalytically separating >850 bp under steady-state conditions. In this report, we examine the kinetic mechanism describing DNA unwinding of TraI. The kinetic step size of TraI was measured under both single turnover and pre-steady-state conditions. The resulting kinetic step-size estimate was approximately 6-8 bp step(-1). TraI can separate double-stranded DNA at a rate of approximately 1100 bp s(-1), similar to the measured unwinding rate of the RecBCD helicase, and appears to dissociate very slowly from the 3' terminus following translocation and strand-separation events. Analyses of pre-steady-state burst amplitudes indicate that TraI can function as a monomer, similar to the bacteriophage T4 helicase, Dda. However, unlike Dda, TraI is a highly processive monomeric helicase, making it unique among the DNA helicases characterized thus far.

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Year:  2006        PMID: 16984922     DOI: 10.1074/jbc.M604412200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  28 in total

1.  Single-stranded DNA binding by F TraI relaxase and helicase domains is coordinately regulated.

Authors:  Lubomír Dostál; Joel F Schildbach
Journal:  J Bacteriol       Date:  2010-04-30       Impact factor: 3.490

2.  Hepatitis C virus NS3 helicase forms oligomeric structures that exhibit optimal DNA unwinding activity in vitro.

Authors:  Bartek Sikora; Yingfeng Chen; Cheryl F Lichti; Melody K Harrison; Thomas A Jennings; Yong Tang; Alan J Tackett; John B Jordan; Joshua Sakon; Craig E Cameron; Kevin D Raney
Journal:  J Biol Chem       Date:  2008-02-18       Impact factor: 5.157

3.  A nonuniform stepping mechanism for E. coli UvrD monomer translocation along single-stranded DNA.

Authors:  Eric J Tomko; Christopher J Fischer; Anita Niedziela-Majka; Timothy M Lohman
Journal:  Mol Cell       Date:  2007-05-11       Impact factor: 17.970

4.  Functional characterization of the multidomain F plasmid TraI relaxase-helicase.

Authors:  Yuan Cheng; Dan E McNamara; Michael J Miley; Rebekah P Nash; Matthew R Redinbo
Journal:  J Biol Chem       Date:  2011-02-02       Impact factor: 5.157

5.  Structure and Mechanisms of SF1 DNA Helicases.

Authors:  Kevin D Raney; Alicia K Byrd; Suja Aarattuthodiyil
Journal:  Adv Exp Med Biol       Date:  2013       Impact factor: 2.622

6.  Kinetics of DNA unwinding by the RecD2 helicase from Deinococcus radiodurans.

Authors:  William R Shadrick; Douglas A Julin
Journal:  J Biol Chem       Date:  2010-03-31       Impact factor: 5.157

7.  Structural and functional studies of SF1B Pif1 from Thermus oshimai reveal dimerization-induced helicase inhibition.

Authors:  Yang-Xue Dai; Wei-Fei Chen; Na-Nv Liu; Fang-Yuan Teng; Hai-Lei Guo; Xi-Miao Hou; Shuo-Xing Dou; Stephane Rety; Xu-Guang Xi
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

Review 8.  Structure and function of Pif1 helicase.

Authors:  Alicia K Byrd; Kevin D Raney
Journal:  Biochem Soc Trans       Date:  2017-09-12       Impact factor: 5.407

9.  Protein and DNA effectors control the TraI conjugative helicase of plasmid R1.

Authors:  Marta V Sut; Sanja Mihajlovic; Silvia Lang; Christian J Gruber; Ellen L Zechner
Journal:  J Bacteriol       Date:  2009-09-18       Impact factor: 3.490

10.  Yeast Pif1 helicase exhibits a one-base-pair stepping mechanism for unwinding duplex DNA.

Authors:  Ramanagouda Ramanagoudr-Bhojappa; Shubeena Chib; Alicia K Byrd; Suja Aarattuthodiyil; Manjula Pandey; Smita S Patel; Kevin D Raney
Journal:  J Biol Chem       Date:  2013-04-17       Impact factor: 5.157

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