Literature DB >> 1547331

Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. III. Complete structure.

M C Wiener1, S H White.   

Abstract

We present in this paper the complete structure of 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) in the L alpha phase (66% RH, 23 degrees C) obtained by the joint refinement of neutron and x-ray lamellar diffraction data. The structural details obtained have previously required a large number of neutron diffraction experiments, using numerous specifically-deuterated phospholipid isomorphs (Büldt et al., 1978. Nature (Lond.). 271:182-184). The joint-refinement approach minimizes specific deuteration by utilizing independent neutron and x-ray data sets. The method yields a quasimolecular structure consisting of a series of multiatomic fragments that are each represented by one or several Gaussian distributions whose positions and widths can be determined to within 0.06 to 0.52 A exclusive of the methylene region. The image of DOPC at 66% RH (5.36 +/- 0.08 waters per lipid) is consistent with many aspects of bilayer structure previously determined by structural and spectroscopic studies. The most striking feature of the structure is the large amount of transbilayer thermal motion suggested by the widths and overlaps of the Gaussian envelopes of the quasimolecular fragments. We discuss the "dynamic bilayer thickness" which describes the minimum effective thickness of the hydrocarbon permeability barrier in terms of the thermal motion of the water. A gradient of thermal motion exists that increases in either direction away from the glycerol backbone which is the most constrained portion of the bilayer. The steric interactions between headgroups of apposed bilayers, expected at the hydration level of our experiments, are clearly revealed. A useful consequence of the quasimolecular structure is that average boundaries within bilayers calculated using composition and volumetric data and ad hoc assumptions can be related to the positions of the principal structural groups. Several measures of "bilayer thickness" in common use can be identified as the positions of the cholines for Luzzati's d1 (Luzzati and Husson. 1962. J. Cell Biol. 12:207-219) and the glycerols for Small's dL (Small. 1967. J. Lipid Res. 8:551-556). We do not know if these relations will be true at other hydrations or for other lipids. Of particular interest is the fact that the position of the carbonyl groups marks the average hydrocarbon/headgroup boundary. It must be emphasized, however, that this region of the bilayer must be generally characterized as one of tumultuous chemical heterogeneity because of the thermal motion of the bilayer.

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Year:  1992        PMID: 1547331      PMCID: PMC1260259          DOI: 10.1016/S0006-3495(92)81849-0

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  34 in total

1.  Fluid bilayer structure determination by the combined use of x-ray and neutron diffraction. I. Fluid bilayer models and the limits of resolution.

Authors:  M C Wiener; S H White
Journal:  Biophys J       Date:  1991-01       Impact factor: 4.033

2.  Conformational analysis of the polar head group in phosphatidylcholine bilayers: a structural change induced by cations.

Authors:  H Akutsu; T Nagamori
Journal:  Biochemistry       Date:  1991-05-07       Impact factor: 3.162

3.  Structure of fully hydrated bilayer dispersions.

Authors:  J F Nagle; M C Wiener
Journal:  Biochim Biophys Acta       Date:  1988-07-07

4.  Neutron diffraction studies on phosphatidylcholine model membranes. I. Head group conformation.

Authors:  G Büldt; H U Gally; J Seelig; G Zaccai
Journal:  J Mol Biol       Date:  1979-11-15       Impact factor: 5.469

5.  Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. II. Distribution and packing of terminal methyl groups.

Authors:  M C Wiener; S H White
Journal:  Biophys J       Date:  1992-02       Impact factor: 4.033

6.  Hexane dissolved in dioleoyllecithin bilayers has a partial molar volume of approximately zero.

Authors:  G I King; R E Jacobs; S H White
Journal:  Biochemistry       Date:  1985-08-13       Impact factor: 3.162

7.  On the position of the hydro-phobic/philic boundary in lipid bilayers.

Authors:  J R Scherer
Journal:  Biophys J       Date:  1989-05       Impact factor: 4.033

8.  Determining bilayer hydrocarbon thickness from neutron diffraction measurements using strip-function models.

Authors:  G I King; S H White
Journal:  Biophys J       Date:  1986-05       Impact factor: 4.033

9.  X-ray diffraction study of the polymorphic behavior of N-methylated dioleoylphosphatidylethanolamine.

Authors:  S M Gruner; M W Tate; G L Kirk; P T So; D C Turner; D T Keane; C P Tilcock; P R Cullis
Journal:  Biochemistry       Date:  1988-04-19       Impact factor: 3.162

10.  The nature of the hydrophobic binding of small peptides at the bilayer interface: implications for the insertion of transbilayer helices.

Authors:  R E Jacobs; S H White
Journal:  Biochemistry       Date:  1989-04-18       Impact factor: 3.162

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  231 in total

1.  Structure, location, and lipid perturbations of melittin at the membrane interface.

Authors:  K Hristova; C E Dempsey; S H White
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

2.  Inclusion-induced bilayer deformations: effects of monolayer equilibrium curvature.

Authors:  C Nielsen; O S Andersen
Journal:  Biophys J       Date:  2000-11       Impact factor: 4.033

3.  Molecular simulation of dioleoylphosphatidylcholine lipid bilayers at differing levels of hydration.

Authors:  R J Mashl; H L Scott; S Subramaniam; E Jakobsson
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

4.  Toward genomic identification of beta-barrel membrane proteins: composition and architecture of known structures.

Authors:  William C Wimley
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

5.  Mesoscopic simulation of cell membrane damage, morphology change and rupture by nonionic surfactants.

Authors:  R D Groot; K L Rabone
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

6.  Gramicidin A channels switch between stretch activation and stretch inactivation depending on bilayer thickness.

Authors:  Boris Martinac; Owen P Hamill
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-19       Impact factor: 11.205

7.  Orientation, dynamics, and lipid interaction of an antimicrobial arylamide investigated by 19F and 31P solid-state NMR spectroscopy.

Authors:  Yongchao Su; William F DeGrado; Mei Hong
Journal:  J Am Chem Soc       Date:  2010-07-07       Impact factor: 15.419

8.  Antimicrobial peptides and induced membrane curvature: geometry, coordination chemistry, and molecular engineering.

Authors:  Nathan W Schmidt; Gerard C L Wong
Journal:  Curr Opin Solid State Mater Sci       Date:  2013-08       Impact factor: 11.354

9.  Molecular dynamics simulation of transmembrane polypeptide orientational fluctuations.

Authors:  David J Goodyear; Simon Sharpe; Chris W M Grant; Michael R Morrow
Journal:  Biophys J       Date:  2004-10-15       Impact factor: 4.033

10.  Influence of surface chemistry on the structural organization of monomolecular protein layers adsorbed to functionalized aqueous interfaces.

Authors:  M Lösche; M Piepenstock; A Diederich; T Grünewald; K Kjaer; D Vaknin
Journal:  Biophys J       Date:  1993-11       Impact factor: 4.033

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