Literature DB >> 20152922

MicroRNAs as genetic sculptors: fishing for clues.

Carter M Takacs1, Antonio J Giraldez.   

Abstract

microRNAs (miRNAs) encode small RNA molecules of approximately 22nts in length that regulate the deadenylation, translation, and decay of their target mRNAs. The identification of miRNAs in plants and animals has uncovered a new layer of gene regulation with important implications for development, cellular homeostasis and disease. Because each miRNA is predicted to regulate several hundred genes, a major challenge in the field remains to elucidate the precise roles for each miRNA and to understand the physiological relevance of individual miRNA-target interactions in vivo. Despite the wide variety of biological contexts where miRNAs function, a common theme emerges, whereby miRNAs shape gene expression within both spatial and temporal dimensions by removing messages from previous cellular states as well as modulating the levels of actively transcribed genes. This review will focus on the role that the teleost Danio rerio (zebrafish) has played in shaping our understanding of miRNA function in vertebrates. (c) 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20152922      PMCID: PMC2907464          DOI: 10.1016/j.semcdb.2010.02.003

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  87 in total

1.  Zebrafish miR-214 modulates Hedgehog signaling to specify muscle cell fate.

Authors:  Alex S Flynt; Nan Li; Elizabeth J Thatcher; Lilianna Solnica-Krezel; James G Patton
Journal:  Nat Genet       Date:  2007-01-14       Impact factor: 38.330

2.  DGCR8 is essential for microRNA biogenesis and silencing of embryonic stem cell self-renewal.

Authors:  Yangming Wang; Rostislav Medvid; Collin Melton; Rudolf Jaenisch; Robert Blelloch
Journal:  Nat Genet       Date:  2007-01-28       Impact factor: 38.330

Review 3.  microRNA functions.

Authors:  Natascha Bushati; Stephen M Cohen
Journal:  Annu Rev Cell Dev Biol       Date:  2007       Impact factor: 13.827

4.  microRNAs: a safeguard against turmoil?

Authors:  Anthony K L Leung; Phillip A Sharp
Journal:  Cell       Date:  2007-08-24       Impact factor: 41.582

5.  Target protectors reveal dampening and balancing of Nodal agonist and antagonist by miR-430.

Authors:  Wen-Yee Choi; Antonio J Giraldez; Alexander F Schier
Journal:  Science       Date:  2007-08-30       Impact factor: 47.728

6.  Control of stress-dependent cardiac growth and gene expression by a microRNA.

Authors:  Eva van Rooij; Lillian B Sutherland; Xiaoxia Qi; James A Richardson; Joseph Hill; Eric N Olson
Journal:  Science       Date:  2007-03-22       Impact factor: 47.728

7.  RNA-binding protein Dnd1 inhibits microRNA access to target mRNA.

Authors:  Martijn Kedde; Markus J Strasser; Bijan Boldajipour; Joachim A F Oude Vrielink; Krasimir Slanchev; Carlos le Sage; Remco Nagel; P Mathijs Voorhoeve; Josyanne van Duijse; Ulf Andersson Ørom; Anders H Lund; Anastassis Perrakis; Erez Raz; Reuven Agami
Journal:  Cell       Date:  2007-12-28       Impact factor: 41.582

8.  Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1-2.

Authors:  Yong Zhao; Joshua F Ransom; Ankang Li; Vasanth Vedantham; Morgan von Drehle; Alecia N Muth; Takatoshi Tsuchihashi; Michael T McManus; Robert J Schwartz; Deepak Srivastava
Journal:  Cell       Date:  2007-03-29       Impact factor: 41.582

9.  Critical roles for Dicer in the female germline.

Authors:  Elizabeth P Murchison; Paula Stein; Zhenyu Xuan; Hua Pan; Michael Q Zhang; Richard M Schultz; Gregory J Hannon
Journal:  Genes Dev       Date:  2007-03-15       Impact factor: 11.361

10.  Targeted inhibition of miRNA maturation with morpholinos reveals a role for miR-375 in pancreatic islet development.

Authors:  Wigard P Kloosterman; Anne K Lagendijk; René F Ketting; Jon D Moulton; Ronald H A Plasterk
Journal:  PLoS Biol       Date:  2007-08       Impact factor: 8.029

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  14 in total

Review 1.  microRNAs, the cell's Nepenthe: clearing the past during the maternal-to-zygotic transition and cellular reprogramming.

Authors:  Antonio J Giraldez
Journal:  Curr Opin Genet Dev       Date:  2010-05-06       Impact factor: 5.578

2.  Regulation of endoderm formation and left-right asymmetry by miR-92 during early zebrafish development.

Authors:  Nan Li; Chunyao Wei; Abigail F Olena; James G Patton
Journal:  Development       Date:  2011-03-29       Impact factor: 6.868

3.  Zygotic Genome Activation: Critical Prelude to the Most Important Time of Your Life.

Authors:  Vladimir Korzh
Journal:  Methods Mol Biol       Date:  2021

Review 4.  FXR1a-associated microRNP: A driver of specialized non-canonical translation in quiescent conditions.

Authors:  Syed I A Bukhari; Shobha Vasudevan
Journal:  RNA Biol       Date:  2016-12-02       Impact factor: 4.652

5.  MicroRNAs sculpt gene expression in embryonic development: new insights from plants.

Authors:  Ariel A Bazzini; Antonio J Giraldez
Journal:  Dev Cell       Date:  2011-01-18       Impact factor: 12.270

Review 6.  The genetics of hair cell development and regeneration.

Authors:  Andrew K Groves; Kaidi D Zhang; Donna M Fekete
Journal:  Annu Rev Neurosci       Date:  2013-05-29       Impact factor: 12.449

7.  Steroid-induced microRNA let-7 acts as a spatio-temporal code for neuronal cell fate in the developing Drosophila brain.

Authors:  Mariya M Kucherenko; Jonas Barth; André Fiala; Halyna R Shcherbata
Journal:  EMBO J       Date:  2012-11-16       Impact factor: 11.598

8.  Integration of transcriptomics, proteomics, and microRNA analyses reveals novel microRNA regulation of targets in the mammalian inner ear.

Authors:  Tal Elkan-Miller; Igor Ulitsky; Ronna Hertzano; Anya Rudnicki; Amiel A Dror; Danielle R Lenz; Ran Elkon; Martin Irmler; Johannes Beckers; Ron Shamir; Karen B Avraham
Journal:  PLoS One       Date:  2011-04-05       Impact factor: 3.240

Review 9.  The admiR-able advances in cardiovascular biology through the zebrafish model system.

Authors:  Dafne Gays; Massimo Mattia Santoro
Journal:  Cell Mol Life Sci       Date:  2012-10-16       Impact factor: 9.261

Review 10.  MicroRNAs in inflammatory lung disease--master regulators or target practice?

Authors:  Irene K Oglesby; Noel G McElvaney; Catherine M Greene
Journal:  Respir Res       Date:  2010-10-28
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