Literature DB >> 19058277

A single-molecule perspective on the role of solvent hydrogen bonds in protein folding and chemical reactions.

Lorna Dougan1, Ainavarapu Sri Rama Koti, Georgi Genchev, Hui Lu, Julio M Fernandez.   

Abstract

We present an array of force spectroscopy experiments that aim to identify the role of solvent hydrogen bonds in protein folding and chemical reactions at the single-molecule level. In our experiments we control the strength of hydrogen bonds in the solvent environment by substituting water (H(2)O) with deuterium oxide (D(2)O). Using a combination of force protocols, we demonstrate that protein unfolding, protein collapse, protein folding and a chemical reaction are affected in different ways by substituting H(2)O with D(2)O. We find that D(2)O molecules form an integral part of the unfolding transition structure of the immunoglobulin module of human cardiac titin, I27. Strikingly, we find that D(2)O is a worse solvent than H(2)O for the protein I27, in direct contrast with the behaviour of simple hydrocarbons. We measure the effect of substituting H(2)O with D(2)O on the force dependent rate of reduction of a disulphide bond engineered within a single protein. Altogether, these experiments provide new information on the nature of the underlying interactions in protein folding and chemical reactions and demonstrate the power of single-molecule techniques to identify the changes induced by a small change in hydrogen bond strength.

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Year:  2008        PMID: 19058277     DOI: 10.1002/cphc.200800572

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  14 in total

Review 1.  Single-molecule force spectroscopy approach to enzyme catalysis.

Authors:  Jorge Alegre-Cebollada; Raul Perez-Jimenez; Pallav Kosuri; Julio M Fernandez
Journal:  J Biol Chem       Date:  2010-04-09       Impact factor: 5.157

2.  Single-molecule spectroscopy of protein folding in a chaperonin cage.

Authors:  Hagen Hofmann; Frank Hillger; Shawn H Pfeil; Armin Hoffmann; Daniel Streich; Dominik Haenni; Daniel Nettels; Everett A Lipman; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-14       Impact factor: 11.205

3.  Full reconstruction of a vectorial protein folding pathway by atomic force microscopy and molecular dynamics simulations.

Authors:  Whasil Lee; Xiancheng Zeng; Huan-Xiang Zhou; Vann Bennett; Weitao Yang; Piotr E Marszalek
Journal:  J Biol Chem       Date:  2010-09-24       Impact factor: 5.157

4.  Osmolyte-induced separation of the mechanical folding phases of ubiquitin.

Authors:  Sergi Garcia-Manyes; Lorna Dougan; Julio M Fernández
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-16       Impact factor: 11.205

5.  Tuning the elastic modulus of hydrated collagen fibrils.

Authors:  Colin A Grant; David J Brockwell; Sheena E Radford; Neil H Thomson
Journal:  Biophys J       Date:  2009-12-02       Impact factor: 4.033

6.  Probing osmolyte participation in the unfolding transition state of a protein.

Authors:  Lorna Dougan; Georgi Z Genchev; Hui Lu; Julio M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-25       Impact factor: 11.205

7.  Worm-like Ising model for protein mechanical unfolding under the effect of osmolytes.

Authors:  Daniel Aioanei; Marco Brucale; Isabella Tessari; Luigi Bubacco; Bruno Samorì
Journal:  Biophys J       Date:  2012-01-18       Impact factor: 4.033

8.  Preparing monodisperse macromolecular samples for successful biological small-angle X-ray and neutron-scattering experiments.

Authors:  Cy M Jeffries; Melissa A Graewert; Clément E Blanchet; David B Langley; Andrew E Whitten; Dmitri I Svergun
Journal:  Nat Protoc       Date:  2016-10-06       Impact factor: 13.491

Review 9.  Understanding biology by stretching proteins: recent progress.

Authors:  Albert Galera-Prat; Angel Gómez-Sicilia; Andres F Oberhauser; Marek Cieplak; Mariano Carrión-Vázquez
Journal:  Curr Opin Struct Biol       Date:  2010-02-06       Impact factor: 6.809

10.  Mechanochemistry: one bond at a time.

Authors:  Jian Liang; Julio M Fernández
Journal:  ACS Nano       Date:  2009-07-02       Impact factor: 15.881

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