Literature DB >> 20127166

New insights into the karyotypic evolution in muroid rodents revealed by multicolor banding applying murine probes.

Vladimir A Trifonov1, Nadezda Kosyakova, Svetlana A Romanenko, Roscoe Stanyon, Alexander S Graphodatsky, Thomas Liehr.   

Abstract

Muroid rodents are composed of a wide range of species characterized by extensive karyotypic evolution. Even if this group includes such important laboratory animal models as domestic mouse (Mus musculus), Norway rat (Rattus norvegicus), Chinese hamster (Cricetulus griseus), and golden hamster (Mesocricetus auratus), comparative cytogenetic studies between rodents are difficult due to the characteristic rapid karyotypic evolution. Molecular cytogenetic methods can help resolve problems of comparing muroid chromosomes. Here, we used cross-species comparative multicolour banding with probes obtained from mouse chromosomes 3, 6, 18, and 19 to study the karyotypes of nine muroid species from the three subfamilies Murinae, Cricetinae, and Arvicolinae. Results from multicolour banding with these murine probes (mcb) allowed us to improve the comparative homology maps between these species and to obtain new insights into their karyotypic evolution. We identified evolutionary conserved chromosomal breakpoints and revealed four previously unrecognized homologous segments, four inversions, and 14 evolutionary new centromeres in the nine muroid species studied. We found Mus apomorphic rearrangements, not seen in other muroids, and defined several subfamily specific chromosome breaks, characteristic for Arvicolinae and Cricetinae. We show that mcb libraries are an effective tool both for the cytogenetic characterisation of important laboratory models such as the rat and hamster as well as elucidating the complex phylogenomics relationships of muroids.

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Year:  2010        PMID: 20127166     DOI: 10.1007/s10577-010-9110-6

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  27 in total

1.  Comparative chromosome map of the laboratory mouse and Chinese hamster defined by reciprocal chromosome painting.

Authors:  F Yang; P C O'Brien; M A Ferguson-Smith
Journal:  Chromosome Res       Date:  2000       Impact factor: 5.239

2.  Molecular cytogenetic characterization of the mouse cell line WMP2 by spectral karyotyping and multicolor banding applying murine probes.

Authors:  Constanze Karst; Vladimir Trifonov; Svetlana A Romanenko; Uwe Claussen; Kristin Mrasek; Susanne Michel; Philip Avner; Thomas Liehr
Journal:  Int J Mol Med       Date:  2006-02       Impact factor: 4.101

3.  Between rat and mouse zoo-FISH reveals 49 chromosomal segments that have been conserved in evolution.

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Journal:  Mamm Genome       Date:  2001-10       Impact factor: 2.957

4.  New aspects of chromosomal evolution in the gorilla and the orangutan.

Authors:  Anja Weise; Madeleine Gross; Sabine Schmidt; Franziska Reichelt; Uwe Claussen; Thomas Liehr
Journal:  Int J Mol Med       Date:  2007-03       Impact factor: 4.101

5.  Phylogenomics of the genus Mus (Rodentia; Muridae): extensive genome repatterning is not restricted to the house mouse.

Authors:  Frederic Veyrunes; Gauthier Dobigny; Fengtang Yang; Patricia C M O'Brien; Josette Catalan; Terence J Robinson; Janice Britton-Davidian
Journal:  Proc Biol Sci       Date:  2006-12-07       Impact factor: 5.349

Review 6.  Primate chromosome evolution: ancestral karyotypes, marker order and neocentromeres.

Authors:  R Stanyon; M Rocchi; O Capozzi; R Roberto; D Misceo; M Ventura; M F Cardone; F Bigoni; N Archidiacono
Journal:  Chromosome Res       Date:  2008       Impact factor: 5.239

7.  Detailed Hylobates lar karyotype defined by 25-color FISH and multicolor banding.

Authors:  Kristin Mrasek; Anita Heller; Nikolai Rubtsov; Vladimir Trifonov; Heike Starke; Uwe Claussen; Thomas Liehr
Journal:  Int J Mol Med       Date:  2003-08       Impact factor: 4.101

8.  Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:  Richard A Gibbs; George M Weinstock; Michael L Metzker; Donna M Muzny; Erica J Sodergren; Steven Scherer; Graham Scott; David Steffen; Kim C Worley; Paula E Burch; Geoffrey Okwuonu; Sandra Hines; Lora Lewis; Christine DeRamo; Oliver Delgado; Shannon Dugan-Rocha; George Miner; Margaret Morgan; Alicia Hawes; Rachel Gill; Robert A Holt; Mark D Adams; Peter G Amanatides; Holly Baden-Tillson; Mary Barnstead; Soo Chin; Cheryl A Evans; Steve Ferriera; Carl Fosler; Anna Glodek; Zhiping Gu; Don Jennings; Cheryl L Kraft; Trixie Nguyen; Cynthia M Pfannkoch; Cynthia Sitter; Granger G Sutton; J Craig Venter; Trevor Woodage; Douglas Smith; Hong-Mei Lee; Erik Gustafson; Patrick Cahill; Arnold Kana; Lynn Doucette-Stamm; Keith Weinstock; Kim Fechtel; Robert B Weiss; Diane M Dunn; Eric D Green; Robert W Blakesley; Gerard G Bouffard; Pieter J De Jong; Kazutoyo Osoegawa; Baoli Zhu; Marco Marra; Jacqueline Schein; Ian Bosdet; Chris Fjell; Steven Jones; Martin Krzywinski; Carrie Mathewson; Asim Siddiqui; Natasja Wye; John McPherson; Shaying Zhao; Claire M Fraser; Jyoti Shetty; Sofiya Shatsman; Keita Geer; Yixin Chen; Sofyia Abramzon; William C Nierman; Paul H Havlak; Rui Chen; K James Durbin; Amy Egan; Yanru Ren; Xing-Zhi Song; Bingshan Li; Yue Liu; Xiang Qin; Simon Cawley; Kim C Worley; A J Cooney; Lisa M D'Souza; Kirt Martin; Jia Qian Wu; Manuel L Gonzalez-Garay; Andrew R Jackson; Kenneth J Kalafus; Michael P McLeod; Aleksandar Milosavljevic; Davinder Virk; Andrei Volkov; David A Wheeler; Zhengdong Zhang; Jeffrey A Bailey; Evan E Eichler; Eray Tuzun; Ewan Birney; Emmanuel Mongin; Abel Ureta-Vidal; Cara Woodwark; Evgeny Zdobnov; Peer Bork; Mikita Suyama; David Torrents; Marina Alexandersson; Barbara J Trask; Janet M Young; Hui Huang; Huajun Wang; Heming Xing; Sue Daniels; Darryl Gietzen; Jeanette Schmidt; Kristian Stevens; Ursula Vitt; Jim Wingrove; Francisco Camara; M Mar Albà; Josep F Abril; Roderic Guigo; Arian Smit; Inna Dubchak; Edward M Rubin; Olivier Couronne; Alexander Poliakov; Norbert Hübner; Detlev Ganten; Claudia Goesele; Oliver Hummel; Thomas Kreitler; Young-Ae Lee; Jan Monti; Herbert Schulz; Heike Zimdahl; Heinz Himmelbauer; Hans Lehrach; Howard J Jacob; Susan Bromberg; Jo Gullings-Handley; Michael I Jensen-Seaman; Anne E Kwitek; Jozef Lazar; Dean Pasko; Peter J Tonellato; Simon Twigger; Chris P Ponting; Jose M Duarte; Stephen Rice; Leo Goodstadt; Scott A Beatson; Richard D Emes; Eitan E Winter; Caleb Webber; Petra Brandt; Gerald Nyakatura; Margaret Adetobi; Francesca Chiaromonte; Laura Elnitski; Pallavi Eswara; Ross C Hardison; Minmei Hou; Diana Kolbe; Kateryna Makova; Webb Miller; Anton Nekrutenko; Cathy Riemer; Scott Schwartz; James Taylor; Shan Yang; Yi Zhang; Klaus Lindpaintner; T Dan Andrews; Mario Caccamo; Michele Clamp; Laura Clarke; Valerie Curwen; Richard Durbin; Eduardo Eyras; Stephen M Searle; Gregory M Cooper; Serafim Batzoglou; Michael Brudno; Arend Sidow; Eric A Stone; J Craig Venter; Bret A Payseur; Guillaume Bourque; Carlos López-Otín; Xose S Puente; Kushal Chakrabarti; Sourav Chatterji; Colin Dewey; Lior Pachter; Nicolas Bray; Von Bing Yap; Anat Caspi; Glenn Tesler; Pavel A Pevzner; David Haussler; Krishna M Roskin; Robert Baertsch; Hiram Clawson; Terrence S Furey; Angie S Hinrichs; Donna Karolchik; William J Kent; Kate R Rosenbloom; Heather Trumbower; Matt Weirauch; David N Cooper; Peter D Stenson; Bin Ma; Michael Brent; Manimozhiyan Arumugam; David Shteynberg; Richard R Copley; Martin S Taylor; Harold Riethman; Uma Mudunuri; Jane Peterson; Mark Guyer; Adam Felsenfeld; Susan Old; Stephen Mockrin; Francis Collins
Journal:  Nature       Date:  2004-04-01       Impact factor: 49.962

9.  Phylogeny and divergence-date estimates of rapid radiations in muroid rodents based on multiple nuclear genes.

Authors:  Scott Steppan; Ronald Adkins; Joel Anderson
Journal:  Syst Biol       Date:  2004-08       Impact factor: 15.683

10.  Comparative karyotype of rat and mouse using bidirectional chromosome painting.

Authors:  M N Guilly; P Fouchet; P de Chamisso; A Schmitz; B Dutrillaux
Journal:  Chromosome Res       Date:  1999       Impact factor: 4.620

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  12 in total

Review 1.  Chromosomal evolution in Rodentia.

Authors:  S A Romanenko; P L Perelman; V A Trifonov; A S Graphodatsky
Journal:  Heredity (Edinb)       Date:  2011-11-16       Impact factor: 3.821

2.  Evolution of the structure and composition of house mouse satellite DNA sequences in the subgenus Mus (Rodentia: Muridea): a cytogenomic approach.

Authors:  B Cazaux; J Catalan; F Justy; C Escudé; E Desmarais; J Britton-Davidian
Journal:  Chromosoma       Date:  2013-03-21       Impact factor: 4.316

3.  The genome diversity and karyotype evolution of mammals.

Authors:  Alexander S Graphodatsky; Vladimir A Trifonov; Roscoe Stanyon
Journal:  Mol Cytogenet       Date:  2011-10-12       Impact factor: 2.009

4.  Genome-wide comparative chromosome maps of Arvicola amphibius, Dicrostonyx torquatus, and Myodes rutilus.

Authors:  Svetlana A Romanenko; Natalya A Lemskaya; Vladimir A Trifonov; Natalya A Serdyukova; Patricia C M O'Brien; Nina Sh Bulatova; Feodor N Golenishchev; Malcolm A Ferguson-Smith; Fengtang Yang; Alexander S Graphodatsky
Journal:  Chromosome Res       Date:  2015-11-26       Impact factor: 5.239

Review 5.  The Robertsonian phenomenon in the house mouse: mutation, meiosis and speciation.

Authors:  Silvia Garagna; Jesus Page; Raul Fernandez-Donoso; Maurizio Zuccotti; Jeremy B Searle
Journal:  Chromosoma       Date:  2014-07-23       Impact factor: 4.316

6.  A genetic linkage map and comparative mapping of the prairie vole (Microtus ochrogaster) genome.

Authors:  Lisa A McGraw; Jamie K Davis; Larry J Young; James W Thomas
Journal:  BMC Genet       Date:  2011-07-07       Impact factor: 2.797

7.  Sequencing, annotation and analysis of the Syrian hamster (Mesocricetus auratus) transcriptome.

Authors:  Nicolas Tchitchek; David Safronetz; Angela L Rasmussen; Craig Martens; Kimmo Virtaneva; Stephen F Porcella; Heinz Feldmann; Hideki Ebihara; Michael G Katze
Journal:  PLoS One       Date:  2014-11-14       Impact factor: 3.240

8.  Microdissection of lampbrush chromosomes as an approach for generation of locus-specific FISH-probes and samples for high-throughput sequencing.

Authors:  Anna Zlotina; Tatiana Kulikova; Nadezda Kosyakova; Thomas Liehr; Alla Krasikova
Journal:  BMC Genomics       Date:  2016-02-20       Impact factor: 3.969

9.  Generation of multicolor banding probes for chromosomes of different species.

Authors:  Nadezda Kosyakova; Ahmed Basheer Hamid; Arunrat Chaveerach; Krit Pinthong; Pornnarong Siripiyasing; Weerayuth Supiwong; Svetlana Romanenko; Vladimir Trifonov; Xiaobo Fan
Journal:  Mol Cytogenet       Date:  2013-02-04       Impact factor: 2.009

10.  First molecular cytogenetic high resolution characterization of the NIH 3T3 cell line by murine multicolor banding.

Authors:  Christine Leibiger; Nadezda Kosyakova; Hasmik Mkrtchyan; Michael Glei; Vladimir Trifonov; Thomas Liehr
Journal:  J Histochem Cytochem       Date:  2013-01-15       Impact factor: 2.479

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