Literature DB >> 20124092

Imaging enzymes at work: metabolic mapping by enzyme histochemistry.

Cornelis J F Van Noorden1.   

Abstract

For the understanding of functions of proteins in biological and pathological processes, reporter molecules such as fluorescent proteins have become indispensable tools for visualizing the location of these proteins in intact animals, tissues, and cells. For enzymes, imaging their activity also provides information on their function or functions, which does not necessarily correlate with their location. Metabolic mapping enables imaging of activity of enzymes. The enzyme under study forms a reaction product that is fluorescent or colored by conversion of either a fluorogenic or chromogenic substrate or a fluorescent substrate with different spectral characteristics. Most chromogenic staining methods were developed in the latter half of the twentieth century but still find new applications in modern cell biology and pathology. Fluorescence methods have rapidly evolved during the last decade. This review critically evaluates the methods that are available at present for metabolic mapping in living animals, unfixed cryostat sections of tissues, and living cells, and refers to protocols of the methods of choice.

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Year:  2010        PMID: 20124092      PMCID: PMC2874181          DOI: 10.1369/jhc.2010.955518

Source DB:  PubMed          Journal:  J Histochem Cytochem        ISSN: 0022-1554            Impact factor:   2.479


  135 in total

1.  Apparent role of traveling metabolic waves in oxidant release by living neutrophils.

Authors:  Andrei L Kindzelskii; Howard R Petty
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-24       Impact factor: 11.205

2.  Fluorescence-based assays for screening nine cytochrome P450 (P450) activities in intact cells expressing individual human P450 enzymes.

Authors:  M Teresa Donato; Nuria Jiménez; José V Castell; M José Gómez-Lechón
Journal:  Drug Metab Dispos       Date:  2004-07       Impact factor: 3.922

3.  A major role for TPPII in trimming proteasomal degradation products for MHC class I antigen presentation.

Authors:  Eric Reits; Joost Neijssen; Carla Herberts; Willemien Benckhuijsen; Lennert Janssen; Jan Wouter Drijfhout; Jacques Neefjes
Journal:  Immunity       Date:  2004-04       Impact factor: 31.745

4.  Dynamic imaging of protease activity with fluorescently quenched activity-based probes.

Authors:  Galia Blum; Stefanie R Mullins; Kinneret Keren; Marko Fonovic; Christopher Jedeszko; Mark J Rice; Bonnie F Sloane; Matthew Bogyo
Journal:  Nat Chem Biol       Date:  2005-08-14       Impact factor: 15.040

5.  Quantitative determination of the reduction of phototoxicity and photobleaching by controlled light exposure microscopy.

Authors:  R A Hoebe; H T M Van der Voort; J Stap; C J F Van Noorden; E M M Manders
Journal:  J Microsc       Date:  2008-07       Impact factor: 1.758

6.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

7.  Cell-specific beta-N-acetylglucosaminidase activity in cultures and field populations of eukaryotic marine phytoplankton.

Authors:  Alena Strojsová; Sonya T Dyhrman
Journal:  FEMS Microbiol Ecol       Date:  2008-04-21       Impact factor: 4.194

Review 8.  A user's guide for avoiding errors in absorbance image cytometry: a review with original experimental observations.

Authors:  P Chieco; A Jonker; C Melchiorri; G Vanni; C J Van Noorden
Journal:  Histochem J       Date:  1994-01

9.  Rapid microspectrofluorimetry for biochemical and metabolic studies in single living cells.

Authors:  E Kohen; C Kohen; J M Salmon; G Bengtsson; B Thorell
Journal:  Biochim Biophys Acta       Date:  1974-10-08

10.  Permeation of redox species through a cell membrane of a single, living algal protoplast studied by microamperometry.

Authors:  T Yasukawa; I Uchida; T Matsue
Journal:  Biochim Biophys Acta       Date:  1998-02-02
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  18 in total

1.  In situ detection of active transglutaminases for keratinocyte type (TGase 1) and tissue type (TGase 2) using fluorescence-labeled highly reactive substrate peptides.

Authors:  Miho Itoh; Tadafumi Kawamoto; Hideki Tatsukawa; Soichi Kojima; Kiyofumi Yamanishi; Kiyotaka Hitomi
Journal:  J Histochem Cytochem       Date:  2011-02       Impact factor: 2.479

2.  Variations in both TG1 and TG2 isozyme-specific in situ activities and protein expressions during mouse embryonic development.

Authors:  Miho Itoh; Hideki Tatsukawa; Lee Eun-Seo; Kiyofumi Yamanishi; Soichi Kojima; Kiyotaka Hitomi
Journal:  J Histochem Cytochem       Date:  2013-07-29       Impact factor: 2.479

3.  Image cytometry protocols.

Authors:  Cornelis J F Van Noorden; Pasquale Chieco
Journal:  J Histochem Cytochem       Date:  2013-10       Impact factor: 2.479

4.  Whole-genome metabolic network reconstruction and constraint-based modeling.

Authors:  Charles R Haggart; Jennifer A Bartell; Jeffrey J Saucerman; Jason A Papin
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

5.  Time-gated luminescence microscopy with responsive nonmetal probes for mapping activity of protein kinases in living cells.

Authors:  Angela Vaasa; Kadri Ligi; Shabnam Mohandessi; Erki Enkvist; Asko Uri; Lawrence W Miller
Journal:  Chem Commun (Camb)       Date:  2012-07-20       Impact factor: 6.222

Review 6.  Methods of Measuring Enzyme Activity Ex Vivo and In Vivo.

Authors:  Yangguang Ou; Rachael E Wilson; Stephen G Weber
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2018-03-05       Impact factor: 10.745

7.  Differential activity of NADPH-producing dehydrogenases renders rodents unsuitable models to study IDH1R132 mutation effects in human glioblastoma.

Authors:  Nadia A Atai; Nynke A Renkema-Mills; Joost Bosman; Nadja Schmidt; Denise Rijkeboer; Wikky Tigchelaar; Klazien S Bosch; Dirk Troost; Ard Jonker; Fonnet E Bleeker; Hrvoje Miletic; Rolf Bjerkvig; Philip C De Witt Hamer; Cornelis J F Van Noorden
Journal:  J Histochem Cytochem       Date:  2011-02-10       Impact factor: 2.479

Review 8.  Enzyme-targeted fluorescent small-molecule probes for bacterial imaging.

Authors:  Andrew P Marshall; Joshua D Shirley; Erin E Carlson
Journal:  Curr Opin Chem Biol       Date:  2020-08-13       Impact factor: 8.822

9.  Increased mitochondrial activity in a novel IDH1-R132H mutant human oligodendroglioma xenograft model: in situ detection of 2-HG and α-KG.

Authors:  Anna C Navis; Simone P Niclou; Fred Fack; Daniel Stieber; Sanne van Lith; Kiek Verrijp; Alan Wright; Jonathan Stauber; Bastiaan Tops; Irene Otte-Holler; Ron A Wevers; Arno van Rooij; Stefan Pusch; Andreas von Deimling; Wikky Tigchelaar; Cornelis J F van Noorden; Pieter Wesseling; William P J Leenders
Journal:  Acta Neuropathol Commun       Date:  2013-05-29       Impact factor: 7.801

10.  Determination of phosphate-activated glutaminase activity and its kinetics in mouse tissues using metabolic mapping (quantitative enzyme histochemistry).

Authors:  Dennis Botman; Wikky Tigchelaar; Cornelis J F Van Noorden
Journal:  J Histochem Cytochem       Date:  2014-08-27       Impact factor: 2.479

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