Literature DB >> 20121157

Is Mo involved in hydride binding by the four-electron reduced (E4) intermediate of the nitrogenase MoFe protein?

Dmitriy Lukoyanov1, Zhi-Yong Yang, Dennis R Dean, Lance C Seefeldt, Brian M Hoffman.   

Abstract

We here report the first direct evidence addressing the possible involvement of Mo in substrate interactions during catalytic turnover. When the alpha-70(Ile) MoFe protein is freeze-trapped during H(+) reduction under Ar, the majority of the resting state EPR signal from the molybdenum-iron cofactor (FeMo-co) disappears and is replaced by the S = 1/2 signal of an intermediate that has been shown to be the E(4) MoFe state, which is activated for N(2) binding and reduction through the accumulation of 4 electrons/protons by FeMo-co. ENDOR studies of E(4) showed that it contains two hydrides bound to FeMo-co. We calculate that Mo involvement in hydride binding would require a vector-coupling coefficient for Mo of |K(Mo)| approximately > 0.2 and determine K(Mo) for the E(4) intermediate state through 35 GHz ENDOR measurements of a (95)Mo enriched MoFe protein, further comparing the results with those for the E(0) resting state. The experiments show that Mo of the resting-state FeMo-co is perturbed by the alpha-70(Ile) substitution and that the isotropic (95)Mo hyperfine coupling in E(4) is a(iso) approximately 4 MHz, less than that for the resting state. The decrease in a(iso) for (95)Mo of E(4) from the already small value in the resting state MoFe protein strongly suggests that the resting Mo(IV) is not one-electron reduced during the accumulation of the four electrons of E(4). In any case, the effective K for Mo is very small; |K(Mo)| approximately < 0.04, at least 5-fold less than the lower bound required for Mo to be involved in forming a Mo-H-Fe, hydride. As the hydride couplings also are both far too small and of the wrong symmetry to be associated with a terminal hydride on Mo, we may thus conclude that Mo does not participate in binding a hydride of the catalytically central E(4) intermediate and that only Fe ions are involved. Nonetheless, the response of the Mo coupling to subtle conformational changes in E(0) and to the formation of E(4) suggests that Mo is intimately involved in tuning the geometric and electronic properties of FeMo-co in these states.

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Year:  2010        PMID: 20121157      PMCID: PMC2828500          DOI: 10.1021/ja910613m

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

1.  Mechanism of Molybdenum Nitrogenase.

Authors:  Barbara K. Burgess; David J. Lowe
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  Structureminus signFunction Relationships of Alternative Nitrogenases.

Authors:  Robert R. Eady
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

3.  Trapping H- bound to the nitrogenase FeMo-cofactor active site during H2 evolution: characterization by ENDOR spectroscopy.

Authors:  Robert Y Igarashi; Mikhail Laryukhin; Patricia C Dos Santos; Hong-In Lee; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2005-05-04       Impact factor: 15.419

4.  Connecting nitrogenase intermediates with the kinetic scheme for N2 reduction by a relaxation protocol and identification of the N2 binding state.

Authors:  Dmitriy Lukoyanov; Brett M Barney; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-24       Impact factor: 11.205

Review 5.  Structural basis of biological nitrogen fixation.

Authors:  Douglas C Rees; F Akif Tezcan; Chad A Haynes; Mika Y Walton; Susana Andrade; Oliver Einsle; James B Howard
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2005-04-15       Impact factor: 4.226

6.  Catalytic reduction of dinitrogen to ammonia at a single molybdenum center.

Authors:  Richard R Schrock
Journal:  Acc Chem Res       Date:  2005-12       Impact factor: 22.384

7.  Formation of {[HIPTN(3)N]Mo(III)H}(-) by heterolytic cleavage of H(2) as established by EPR and ENDOR spectroscopy.

Authors:  R Adam Kinney; Dennis G H Hetterscheid; Brian S Hanna; Richard R Schrock; Brian M Hoffman
Journal:  Inorg Chem       Date:  2010-01-18       Impact factor: 5.165

8.  Climbing nitrogenase: toward a mechanism of enzymatic nitrogen fixation.

Authors:  Brian M Hoffman; Dennis R Dean; Lance C Seefeldt
Journal:  Acc Chem Res       Date:  2009-05-19       Impact factor: 22.384

Review 9.  Mechanism of Mo-dependent nitrogenase.

Authors:  Lance C Seefeldt; Brian M Hoffman; Dennis R Dean
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

10.  Localization of a catalytic intermediate bound to the FeMo-cofactor of nitrogenase.

Authors:  Robert Y Igarashi; Patricia C Dos Santos; Walter G Niehaus; Ian G Dance; Dennis R Dean; Lance C Seefeldt
Journal:  J Biol Chem       Date:  2004-06-04       Impact factor: 5.157

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  35 in total

1.  Reversible Photoinduced Reductive Elimination of H2 from the Nitrogenase Dihydride State, the E(4)(4H) Janus Intermediate.

Authors:  Dmitriy Lukoyanov; Nimesh Khadka; Zhi-Yong Yang; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2016-01-20       Impact factor: 15.419

2.  Characterization of the Fe-H bond in a three-coordinate terminal hydride complex of iron(I).

Authors:  Karen P Chiang; Christopher C Scarborough; Masaki Horitani; Nicholas S Lees; Keying Ding; Thomas R Dugan; William W Brennessel; Eckhard Bill; Brian M Hoffman; Patrick L Holland
Journal:  Angew Chem Int Ed Engl       Date:  2012-02-28       Impact factor: 15.336

3.  57Fe ENDOR spectroscopy and 'electron inventory' analysis of the nitrogenase E4 intermediate suggest the metal-ion core of FeMo-cofactor cycles through only one redox couple.

Authors:  Peter E Doan; Joshua Telser; Brett M Barney; Robert Y Igarashi; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2011-10-07       Impact factor: 15.419

Review 4.  Reduction of Substrates by Nitrogenases.

Authors:  Lance C Seefeldt; Zhi-Yong Yang; Dmitriy A Lukoyanov; Derek F Harris; Dennis R Dean; Simone Raugei; Brian M Hoffman
Journal:  Chem Rev       Date:  2020-03-16       Impact factor: 60.622

Review 5.  Advanced paramagnetic resonance spectroscopies of iron-sulfur proteins: Electron nuclear double resonance (ENDOR) and electron spin echo envelope modulation (ESEEM).

Authors:  George E Cutsail; Joshua Telser; Brian M Hoffman
Journal:  Biochim Biophys Acta       Date:  2015-02-14

6.  Reductive Elimination of H2 Activates Nitrogenase to Reduce the N≡N Triple Bond: Characterization of the E4(4H) Janus Intermediate in Wild-Type Enzyme.

Authors:  Dmitriy Lukoyanov; Nimesh Khadka; Zhi-Yong Yang; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2016-08-16       Impact factor: 15.419

7.  Critical computational analysis illuminates the reductive-elimination mechanism that activates nitrogenase for N2 reduction.

Authors:  Simone Raugei; Lance C Seefeldt; Brian M Hoffman
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-24       Impact factor: 11.205

8.  Mechanism of Nitrogenase H2 Formation by Metal-Hydride Protonation Probed by Mediated Electrocatalysis and H/D Isotope Effects.

Authors:  Nimesh Khadka; Ross D Milton; Sudipta Shaw; Dmitriy Lukoyanov; Dennis R Dean; Shelley D Minteer; Simone Raugei; Brian M Hoffman; Lance C Seefeldt
Journal:  J Am Chem Soc       Date:  2017-09-15       Impact factor: 15.419

9.  Carbon dioxide reduction to methane and coupling with acetylene to form propylene catalyzed by remodeled nitrogenase.

Authors:  Zhi-Yong Yang; Vivian R Moure; Dennis R Dean; Lance C Seefeldt
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-12       Impact factor: 11.205

Review 10.  Nitrogenase reduction of carbon-containing compounds.

Authors:  Lance C Seefeldt; Zhi-Yong Yang; Simon Duval; Dennis R Dean
Journal:  Biochim Biophys Acta       Date:  2013-04-16
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