Literature DB >> 20107865

Comparative transcriptomics for mangrove species: an expanding resource.

Maheshi Dassanayake1, Jeff S Haas, Hans J Bohnert, John M Cheeseman.   

Abstract

We present here the Mangrove Transcriptome Database (MTDB), an integrated, web-based platform providing transcript information from all 28 mangrove species for which information is available. Sequences are annotated, and when possible, GO clustered and assigned to KEGG pathways, making MTDB a valuable resource for approaching mangrove or other extremophile biology from the transcriptomic level. As one example outlining the potential of MTDB, we highlight the analysis of mangrove microRNA (miRNA) precursor sequences, miRNA target sites, and their conservation and divergence compared with model plants. MTDB is available at http://mangrove.illinois.edu .

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Year:  2010        PMID： 20107865     DOI： 10.1007/s10142-009-0156-5

Source DB:  PubMed          Journal:  Funct Integr Genomics        ISSN： 1438-793X            Impact factor:   3.410


  37 in total

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Journal:  Science       Date:  2008-05-15       Impact factor: 47.728

Review 8.  Diamonds in the rough: mRNA-like non-coding RNAs.

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9.  The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis.

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  9 in total

Review 1.  Life at the extreme: lessons from the genome.

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3.  De novo genome assembly and in natura epigenomics reveal salinity-induced DNA methylation in the mangrove tree Bruguiera gymnorhiza.

Authors:  Matin Miryeganeh; Ferdinand Marlétaz; Daria Gavriouchkina; Hidetoshi Saze
Journal:  New Phytol       Date:  2021-10-16       Impact factor: 10.323

4.  Transcriptome characterization and sequencing-based identification of salt-responsive genes in Millettia pinnata, a semi-mangrove plant.

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Journal:  DNA Res       Date:  2012-02-19       Impact factor: 4.458

5.  Identification of salt gland-associated genes and characterization of a dehydrin from the salt secretor mangrove Avicennia officinalis.

Authors:  Pavithra A Jyothi-Prakash; Bijayalaxmi Mohanty; Edward Wijaya; Tit-Meng Lim; Qingsong Lin; Chiang-Shiong Loh; Prakash P Kumar
Journal:  BMC Plant Biol       Date:  2014-11-18       Impact factor: 4.215

6.  Small RNA transcriptomes of mangroves evolve adaptively in extreme environments.

Authors:  Ming Wen; Xingqin Lin; Munan Xie; Yushuai Wang; Xu Shen; Zhongqi Liufu; Chung-I Wu; Suhua Shi; Tian Tang
Journal:  Sci Rep       Date:  2016-06-09       Impact factor: 4.379

7.  Comparative Analysis of Transcriptomes in Rhizophoraceae Provides Insights into the Origin and Adaptive Evolution of Mangrove Plants in Intertidal Environments.

Authors:  Wuxia Guo; Haidan Wu; Zhang Zhang; Chao Yang; Ling Hu; Xianggang Shi; Shuguang Jian; Suhua Shi; Yelin Huang
Journal:  Front Plant Sci       Date:  2017-05-16       Impact factor: 5.753

8.  Identification and analysis of red sea mangrove (Avicennia marina) microRNAs by high-throughput sequencing and their association with stress responses.

Authors:  Basel Khraiwesh; Ganesan Pugalenthi; Nina V Fedoroff
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9.  Transcriptomics analysis of salt stress tolerance in the roots of the mangrove Avicennia officinalis.

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  9 in total

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