Literature DB >> 20083605

Intein-mediated cyclization of bacterial acyl carrier protein stabilizes its folded conformation but does not abolish function.

Gerrit Volkmann1, Peter W Murphy, Elden E Rowland, John E Cronan, Xiang-Qin Liu, Christian Blouin, David M Byers.   

Abstract

Bacterial acyl carrier protein (ACP) is essential for the synthesis of fatty acids and serves as the major acyl donor for the formation of phospholipids and other lipid products. Acyl-ACP encloses attached fatty acyl groups in a hydrophobic pocket within a four-helix bundle, but must at least partially unfold to present the acyl chain to the active sites of its multiple enzyme partners. To further examine the constraints of ACP structure and function, we have constructed a cyclic version of Vibrio harveyi ACP, using split-intein technology to covalently join its closely apposed N and C termini. Cyclization stabilized ACP in a folded helical conformation as indicated by gel electrophoresis, circular dichroism, fluorescence, and mass spectrometry. Molecular dynamics simulations also indicated overall decreased polypeptide chain mobility in cyclic ACP, although no major conformational rearrangements over a 10-ns period were noted. In vivo complementation assays revealed that cyclic ACP can functionally replace the linear wild-type protein and support growth of an Escherichia coli ACP-null mutant strain. Cyclization of a folding-deficient ACP mutant (F50A) both restored its ability to adopt a folded conformation and enhanced complementation of growth. Our results thus suggest that ACP must be able to adopt a folded conformation for biological activity, and that its function does not require complete unfolding of the protein.

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Year:  2010        PMID: 20083605      PMCID: PMC2838282          DOI: 10.1074/jbc.M109.060863

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  40 in total

1.  Production of cyclic peptides and proteins in vivo.

Authors:  C P Scott; E Abel-Santos; M Wall; D C Wahnon; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  Site-directed mutagenesis of acyl carrier protein (ACP) reveals amino acid residues involved in ACP structure and acyl-ACP synthetase activity.

Authors:  A S Flaman; J M Chen; S C Van Iderstine; D M Byers
Journal:  J Biol Chem       Date:  2001-07-06       Impact factor: 5.157

3.  NMR studies of Escherichia coli acyl carrier protein: dynamic and structural differences of the apo- and holo-forms.

Authors:  Yangmee Kim; Evgenii L Kovrigin; Ziad Eletr
Journal:  Biochem Biophys Res Commun       Date:  2006-01-19       Impact factor: 3.575

4.  Molecular dynamics simulations of the Apo-, Holo-, and acyl-forms of Escherichia coli acyl carrier protein.

Authors:  David I Chan; Thomas Stockner; D Peter Tieleman; Hans J Vogel
Journal:  J Biol Chem       Date:  2008-09-22       Impact factor: 5.157

5.  Conformational changes in proteins probed by hydrogen-exchange electrospray-ionization mass spectrometry.

Authors:  V Katta; B T Chait
Journal:  Rapid Commun Mass Spectrom       Date:  1991-04       Impact factor: 2.419

6.  Glutamate-41 of Vibrio harveyi acyl carrier protein is essential for fatty acid synthase but not acyl-ACP synthetase activity.

Authors:  Huansheng Gong; David M Byers
Journal:  Biochem Biophys Res Commun       Date:  2003-02-28       Impact factor: 3.575

7.  Solution structures of spinach acyl carrier protein with decanoate and stearate.

Authors:  Gregory A Zornetzer; Brian G Fox; John L Markley
Journal:  Biochemistry       Date:  2006-04-25       Impact factor: 3.162

8.  Structural modification of acyl carrier protein by butyryl group.

Authors:  Bai-Nan Wu; Yong-Mei Zhang; Charles O Rock; Jie J Zheng
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

Review 9.  The application of computational methods to explore the diversity and structure of bacterial fatty acid synthase.

Authors:  Yong-Mei Zhang; Hedia Marrakchi; Stephen W White; Charles O Rock
Journal:  J Lipid Res       Date:  2003-01       Impact factor: 5.922

10.  A mammalian type I fatty acid synthase acyl carrier protein domain does not sequester acyl chains.

Authors:  Eliza Płoskoń; Christopher J Arthur; Simon E Evans; Christopher Williams; John Crosby; Thomas J Simpson; Matthew P Crump
Journal:  J Biol Chem       Date:  2007-10-30       Impact factor: 5.157

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  10 in total

Review 1.  Are Charge-State Distributions a Reliable Tool Describing Molecular Ensembles of Intrinsically Disordered Proteins by Native MS?

Authors:  Antonino Natalello; Carlo Santambrogio; Rita Grandori
Journal:  J Am Soc Mass Spectrom       Date:  2016-10-11       Impact factor: 3.109

2.  Rigidifying acyl carrier protein domain in iterative type I PKS CalE8 does not affect its function.

Authors:  Jackwee Lim; Huihua Sun; Jing-Song Fan; Iman Fahim Hameed; Julien Lescar; Zhao-Xun Liang; Daiwen Yang
Journal:  Biophys J       Date:  2012-09-05       Impact factor: 4.033

3.  Evolution of acyl-ACP-thioesterases and β-ketoacyl-ACP-synthases revealed by protein-protein interactions.

Authors:  Joris Beld; Jillian L Blatti; Craig Behnke; Michael Mendez; Michael D Burkart
Journal:  J Appl Phycol       Date:  2014-08-01       Impact factor: 3.215

4.  The conserved modular elements of the acyl carrier proteins of lipid synthesis are only partially interchangeable.

Authors:  Lei Zhu; John E Cronan
Journal:  J Biol Chem       Date:  2015-04-10       Impact factor: 5.157

Review 5.  Recombinant expression of backbone-cyclized polypeptides.

Authors:  Radhika Borra; Julio A Camarero
Journal:  Biopolymers       Date:  2013-09       Impact factor: 2.505

6.  Disrupting the Acyl Carrier Protein/SpoT interaction in vivo: identification of ACP residues involved in the interaction and consequence on growth.

Authors:  Sandra Angelini; Laetitia My; Emmanuelle Bouveret
Journal:  PLoS One       Date:  2012-04-30       Impact factor: 3.240

7.  Intein-mediated recombinant expression of monomeric B22Asp desB30 insulin.

Authors:  Minmin Zhang; Yunlong Zhang; Bingnan Wu; Yanhao Peng; Altaf Ahmed Simair; Geoffery W Siegel; Changrui Lu; Ting Chen
Journal:  BMC Biotechnol       Date:  2020-01-09       Impact factor: 2.563

8.  Locked and proteolysis-based transcription activator-like effector (TALE) regulation.

Authors:  Jan Lonzarić; Tina Lebar; Andreja Majerle; Mateja Manček-Keber; Roman Jerala
Journal:  Nucleic Acids Res       Date:  2016-01-08       Impact factor: 16.971

9.  Characterizing Aciniform Silk Repetitive Domain Backbone Dynamics and Hydrodynamic Modularity.

Authors:  Marie-Laurence Tremblay; Lingling Xu; Muzaddid Sarker; Xiang-Qin Liu; Jan K Rainey
Journal:  Int J Mol Sci       Date:  2016-08-10       Impact factor: 5.923

10.  Acyl Carrier Protein 3 Is Involved in Oxidative Stress Response in Pseudomonas aeruginosa.

Authors:  Wei Chen; Bo Wang; Jordon D Gruber; Yong-Mei Zhang; Christopher Davies
Journal:  Front Microbiol       Date:  2018-09-20       Impact factor: 5.640

  10 in total

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