Literature DB >> 20083436

The perils of PCR: can we accurately 'correct' antimalarial trials?

Jonathan J Juliano1, Nahla Gadalla, Colin J Sutherland, Steven R Meshnick.   

Abstract

During follow-up in antimalarial drug trials, treated subjects can be newly infected. PCR correction is used to distinguish this re-infection from drug failure (recrudescence) and to adjust final drug efficacy estimates. The epidemiological, biological and technical limitations of PCR correction and how this can lead to misclassification in drug trial outcomes are underappreciated. This article considers these limitations and proposes a framework for reporting, interpreting and improving PCR correction of antimalarial trials. Copyright 2010 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20083436      PMCID: PMC2844636          DOI: 10.1016/j.pt.2009.12.007

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN: 1471-4922


  43 in total

1.  Minority-variant pfcrt K76T mutations and chloroquine resistance, Malawi.

Authors:  Jonathan J Juliano; Jesse J Kwiek; Kathryn Cappell; Victor Mwapasa; Steven R Meshnick
Journal:  Emerg Infect Dis       Date:  2007-06       Impact factor: 6.883

2.  Impact of transmission intensity on the accuracy of genotyping to distinguish recrudescence from new infection in antimalarial clinical trials.

Authors:  Bryan Greenhouse; Christian Dokomajilar; Alan Hubbard; Philip J Rosenthal; Grant Dorsey
Journal:  Antimicrob Agents Chemother       Date:  2007-06-25       Impact factor: 5.191

3.  Single-strand conformational polymorphism analysis differentiates Plasmodium falciparum treatment failures from re-infections.

Authors:  K C Kain; A A Craig; C Ohrt
Journal:  Mol Biochem Parasitol       Date:  1996-08       Impact factor: 1.759

4.  Misclassification of drug failure in Plasmodium falciparum clinical trials in southeast Asia.

Authors:  Jonathan J Juliano; Frederic Ariey; Rithy Sem; Noppadon Tangpukdee; Srivicha Krudsood; Carol Olson; Sornchai Looareesuwan; William O Rogers; Chansuda Wongsrichanalai; Steven R Meshnick
Journal:  J Infect Dis       Date:  2009-08-15       Impact factor: 5.226

Review 5.  Massively parallel pyrosequencing in HIV research.

Authors:  Frederic D Bushman; Christian Hoffmann; Keshet Ronen; Nirav Malani; Nana Minkah; Heather Marshall Rose; Pablo Tebas; Gary P Wang
Journal:  AIDS       Date:  2008-07-31       Impact factor: 4.177

6.  Artemisinin resistance in Plasmodium falciparum malaria.

Authors:  Arjen M Dondorp; François Nosten; Poravuth Yi; Debashish Das; Aung Phae Phyo; Joel Tarning; Khin Maung Lwin; Frederic Ariey; Warunee Hanpithakpong; Sue J Lee; Pascal Ringwald; Kamolrat Silamut; Mallika Imwong; Kesinee Chotivanich; Pharath Lim; Trent Herdman; Sen Sam An; Shunmay Yeung; Pratap Singhasivanon; Nicholas P J Day; Niklas Lindegardh; Duong Socheat; Nicholas J White
Journal:  N Engl J Med       Date:  2009-07-30       Impact factor: 91.245

7.  The role of pfmdr1 in Plasmodium falciparum tolerance to artemether-lumefantrine in Africa.

Authors:  Christin Sisowath; Pedro E Ferreira; Leyla Y Bustamante; Sabina Dahlström; Andreas Mårtensson; Anders Björkman; Sanjeev Krishna; José P Gil
Journal:  Trop Med Int Health       Date:  2007-06       Impact factor: 2.622

Review 8.  Some considerations in the design and interpretation of antimalarial drug trials in uncomplicated falciparum malaria.

Authors:  Kasia Stepniewska; Nicholas J White
Journal:  Malar J       Date:  2006-12-22       Impact factor: 2.979

9.  Optimization and validation of multi-coloured capillary electrophoresis for genotyping of Plasmodium falciparum merozoite surface proteins (msp1 and 2).

Authors:  Anne Liljander; Lisa Wiklund; Nicole Falk; Margaret Kweku; Andreas Mårtensson; Ingrid Felger; Anna Färnert
Journal:  Malar J       Date:  2009-04-23       Impact factor: 2.979

10.  Failure of artesunate-mefloquine combination therapy for uncomplicated Plasmodium falciparum malaria in southern Cambodia.

Authors:  William O Rogers; Rithy Sem; Thong Tero; Pheaktra Chim; Pharath Lim; Sinuon Muth; Duong Socheat; Frédéric Ariey; Chansuda Wongsrichanalai
Journal:  Malar J       Date:  2009-01-12       Impact factor: 2.979

View more
  27 in total

1.  Reply to "no robust evidence of lumefantrine resistance".

Authors:  Mateusz M Plucinski; Eldin Talundzic; Lindsay Morton; Pedro Rafael Dimbu; Aleixo Panzo Macaia; Filomeno Fortes; Ira Goldman; Naomi Lucchi; Gail Stennies; John R MacArthur; Venkatachalam Udhayakumar
Journal:  Antimicrob Agents Chemother       Date:  2015-09       Impact factor: 5.191

2.  Exposing malaria in-host diversity and estimating population diversity by capture-recapture using massively parallel pyrosequencing.

Authors:  Jonathan J Juliano; Kimberly Porter; Victor Mwapasa; Rithy Sem; William O Rogers; Frédéric Ariey; Chansuda Wongsrichanalai; Andrew Read; Steven R Meshnick
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

3.  Relevance of undetectably rare resistant malaria parasites in treatment failure: experimental evidence from Plasmodium chabaudi.

Authors:  Silvie Huijben; Brian H K Chan; Andrew F Read
Journal:  Am J Trop Med Hyg       Date:  2015-05-04       Impact factor: 2.345

4.  Robust Algorithm for Systematic Classification of Malaria Late Treatment Failures as Recrudescence or Reinfection Using Microsatellite Genotyping.

Authors:  Mateusz M Plucinski; Lindsay Morton; Mary Bushman; Pedro Rafael Dimbu; Venkatachalam Udhayakumar
Journal:  Antimicrob Agents Chemother       Date:  2015-07-20       Impact factor: 5.191

5.  A Computer Modelling Approach To Evaluate the Accuracy of Microsatellite Markers for Classification of Recurrent Infections during Routine Monitoring of Antimalarial Drug Efficacy.

Authors:  Sam Jones; Mateusz Plucinski; Katherine Kay; Eva Maria Hodel; Ian M Hastings
Journal:  Antimicrob Agents Chemother       Date:  2020-03-24       Impact factor: 5.191

6.  Long term persistence of clonal malaria parasite Plasmodium falciparum lineages in the Colombian Pacific region.

Authors:  Diego F Echeverry; Shalini Nair; Lyda Osorio; Sanjay Menon; Claribel Murillo; Tim J C Anderson
Journal:  BMC Genet       Date:  2013-01-07       Impact factor: 2.797

7.  Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients.

Authors:  Timothy Robinson; Susana G Campino; Sarah Auburn; Samuel A Assefa; Spencer D Polley; Magnus Manske; Bronwyn MacInnis; Kirk A Rockett; Gareth L Maslen; Mandy Sanders; Michael A Quail; Peter L Chiodini; Dominic P Kwiatkowski; Taane G Clark; Colin J Sutherland
Journal:  PLoS One       Date:  2011-08-11       Impact factor: 3.240

8.  How much remains undetected? Probability of molecular detection of human Plasmodia in the field.

Authors:  Cristian Koepfli; Sonja Schoepflin; Michael Bretscher; Enmoore Lin; Benson Kiniboro; Peter A Zimmerman; Peter Siba; Thomas A Smith; Ivo Mueller; Ingrid Felger
Journal:  PLoS One       Date:  2011-04-28       Impact factor: 3.240

9.  Persistent Submicroscopic Plasmodium falciparum Parasitemia 72 Hours after Treatment with Artemether-Lumefantrine Predicts 42-Day Treatment Failure in Mali and Burkina Faso.

Authors:  Khalid B Beshir; Nouhoum Diallo; Fabrice A Somé; Salif Sombie; Issaka Zongo; Bakary Fofana; Aliou Traore; Souleymane Dama; Amadou Bamadio; Oumar B Traore; Sam A Coulibaly; Ouattara S Maurice; Amidou Diarra; Jean Moise Kaboré; Aly Kodio; Amadou Hamidou Togo; Niawanlou Dara; Moctar Coulibaly; Francois Dao; Frederic Nikiema; Yves D Compaore; Naomie T Kabore; Nouhoun Barry; Issiaka Soulama; Issaka Sagara; Sodiomon B Sirima; Jean-Bosco Ouédraogo; Abdoulaye Djimde; Colin J Sutherland
Journal:  Antimicrob Agents Chemother       Date:  2021-07-16       Impact factor: 5.191

10.  Estimating the numbers of malaria infections in blood samples using high-resolution genotyping data.

Authors:  Amanda Ross; Cristian Koepfli; Xiaohong Li; Sonja Schoepflin; Peter Siba; Ivo Mueller; Ingrid Felger; Thomas Smith
Journal:  PLoS One       Date:  2012-08-29       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.