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Literature DB >> 18614863

Massively parallel pyrosequencing in HIV research.

Frederic D Bushman¹, Christian Hoffmann, Keshet Ronen, Nirav Malani, Nana Minkah, Heather Marshall Rose, Pablo Tebas, Gary P Wang.

Abstract

Entities: Chemical Disease Gene Species

Mesh：

Substances：
DNA, Viral

Year: 2008 PMID： 18614863 PMCID： PMC4221253 DOI： 10.1097/QAD.0b013e3282fc972e

Source DB: PubMed Journal: AIDS ISSN： 0269-9370 Impact factor: 4.177

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35 in total

1. HIV-1 integration in the human genome favors active genes and local hotspots.

Authors: Astrid R W Schröder; Paul Shinn; Huaming Chen; Charles Berry; Joseph R Ecker; Frederic Bushman
Journal: Cell Date: 2002-08-23 Impact factor: 41.582

2. Microbial population structures in the deep marine biosphere.

Authors: Julie A Huber; David B Mark Welch; Hilary G Morrison; Susan M Huse; Phillip R Neal; David A Butterfield; Mitchell L Sogin
Journal: Science Date: 2007-10-05 Impact factor: 47.728

3. Reverse transcriptase fidelity and HIV-1 variation.

Authors: B D Preston
Journal: Science Date: 1997-01-10 Impact factor: 47.728

4. An obesity-associated gut microbiome with increased capacity for energy harvest.

Authors: Peter J Turnbaugh; Ruth E Ley; Michael A Mahowald; Vincent Magrini; Elaine R Mardis; Jeffrey I Gordon
Journal: Nature Date: 2006-12-21 Impact factor: 49.962

5. Intrapartum exposure to nevirapine and subsequent maternal responses to nevirapine-based antiretroviral therapy.

Authors: Gonzague Jourdain; Nicole Ngo-Giang-Huong; Sophie Le Coeur; Chureeratana Bowonwatanuwong; Pacharee Kantipong; Pranee Leechanachai; Surabhon Ariyadej; Prattana Leenasirimakul; Scott Hammer; Marc Lallemant
Journal: N Engl J Med Date: 2004-07-09 Impact factor: 91.245

6. Identification of novel antipoxviral agents: mitoxantrone inhibits vaccinia virus replication by blocking virion assembly.

Authors: Liang Deng; Peihong Dai; Anthony Ciro; Donald F Smee; Hakim Djaballah; Stewart Shuman
Journal: J Virol Date: 2007-10-10 Impact factor: 5.103

7. Obesity alters gut microbial ecology.

Authors: Ruth E Ley; Fredrik Bäckhed; Peter Turnbaugh; Catherine A Lozupone; Robin D Knight; Jeffrey I Gordon
Journal: Proc Natl Acad Sci U S A Date: 2005-07-20 Impact factor: 11.205

8. The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing.

Authors: Jonas Binladen; M Thomas P Gilbert; Jonathan P Bollback; Frank Panitz; Christian Bendixen; Rasmus Nielsen; Eske Willerslev
Journal: PLoS One Date: 2007-02-14 Impact factor: 3.240

9. Role of PSIP1/LEDGF/p75 in lentiviral infectivity and integration targeting.

Authors: Heather M Marshall; Keshet Ronen; Charles Berry; Manuel Llano; Heidi Sutherland; Dyana Saenz; Wendy Bickmore; Eric Poeschla; Frederic D Bushman
Journal: PLoS One Date: 2007-12-19 Impact factor: 3.240

10. LEDGF/p75 functions downstream from preintegration complex formation to effect gene-specific HIV-1 integration.

Authors: Ming-Chieh Shun; Nidhanapati K Raghavendra; Nick Vandegraaff; Janet E Daigle; Siobhan Hughes; Paul Kellam; Peter Cherepanov; Alan Engelman
Journal: Genes Dev Date: 2007-07-15 Impact factor: 11.361

37 in total

1. Simian immunodeficiency virus SIVmac239Deltanef vaccination elicits different Tat28-35SL8-specific CD8+ T-cell clonotypes compared to a DNA prime/adenovirus type 5 boost regimen in rhesus macaques.

Authors: Benjamin J Burwitz; Zachary Ende; Benjamin Sudolcan; Matthew R Reynolds; Justin M Greene; Benjamin N Bimber; Jorge R Almeida; Monica Kurniawan; Vanessa Venturi; Emma Gostick; Roger W Wiseman; Daniel C Douek; David A Price; David H O'Connor
Journal: J Virol Date: 2011-01-26 Impact factor: 5.103

2. Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID.

Authors: Cassandra B Jabara; Corbin D Jones; Jeffrey Roach; Jeffrey A Anderson; Ronald Swanstrom
Journal: Proc Natl Acad Sci U S A Date: 2011-11-30 Impact factor: 11.205

3. Deep sequencing to infer HIV-1 co-receptor usage: application to three clinical trials of maraviroc in treatment-experienced patients.

Authors: Luke C Swenson; Theresa Mo; Winnie W Y Dong; Xiaoyin Zhong; Conan K Woods; Mark A Jensen; Alexander Thielen; Douglass Chapman; Marilyn Lewis; Ian James; Jayvant Heera; Hernan Valdez; P Richard Harrigan
Journal: J Infect Dis Date: 2011-01-15 Impact factor: 5.226

4. Analysis of lentiviral vector integration in HIV+ study subjects receiving autologous infusions of gene modified CD4+ T cells.

Authors: Gary P Wang; Bruce L Levine; Gwendolyn K Binder; Charles C Berry; Nirav Malani; Gary McGarrity; Pablo Tebas; Carl H June; Frederic D Bushman
Journal: Mol Ther Date: 2009-03-03 Impact factor: 11.454

Review 5. Hepatitis C virus genetic variability and evolution.

Authors: Natalia Echeverría; Gonzalo Moratorio; Juan Cristina; Pilar Moreno
Journal: World J Hepatol Date: 2015-04-28

6. The perils of PCR: can we accurately 'correct' antimalarial trials?

Authors: Jonathan J Juliano; Nahla Gadalla; Colin J Sutherland; Steven R Meshnick
Journal: Trends Parasitol Date: 2010-01-18

Review 7. Site-specific integration of retroviral DNA in human cells using fusion proteins consisting of human immunodeficiency virus type 1 integrase and the designed polydactyl zinc-finger protein E2C.

Authors: Kunkai Su; Dan Wang; Jian Ye; Yun C Kim; Samson A Chow
Journal: Methods Date: 2009-01-30 Impact factor: 3.608