Literature DB >> 20064473

Insights into ubiquitin transfer cascades from a structure of a UbcH5B approximately ubiquitin-HECT(NEDD4L) complex.

Hari B Kamadurai1, Judith Souphron, Daniel C Scott, David M Duda, Darcie J Miller, Daniel Stringer, Robert C Piper, Brenda A Schulman.   

Abstract

In E1-E2-E3 ubiquitin (Ub) conjugation cascades, the E2 first forms a transient E2 approximately Ub covalent complex and then interacts with an E3 for Ub transfer. For cascades involving E3s in the HECT class, Ub is transferred from an associated E2 to the acceptor cysteine in the HECT domain C lobe. To gain insights into this process, we determined the crystal structure of a complex between the HECT domain of NEDD4L and the E2 UbcH5B bearing a covalently linked Ub at its active site (UbcH5B approximately Ub). Noncovalent interactions between UbcH5B and the HECT N lobe and between Ub and the HECT domain C lobe lead to an overall compact structure, with the Ub C terminus sandwiched between UbcH5B and HECT domain active sites. The structure suggests a model for E2-to-HECT Ub transfer, in which interactions between a donor Ub and an acceptor domain constrain upstream and downstream enzymes for conjugation. 2009 Elsevier Inc.

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Year:  2009        PMID: 20064473      PMCID: PMC2859195          DOI: 10.1016/j.molcel.2009.11.010

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  38 in total

1.  Structural basis for E2-mediated SUMO conjugation revealed by a complex between ubiquitin-conjugating enzyme Ubc9 and RanGAP1.

Authors:  Victor Bernier-Villamor; Deborah A Sampson; Michael J Matunis; Christopher D Lima
Journal:  Cell       Date:  2002-02-08       Impact factor: 41.582

2.  Mechanism of ubiquitin recognition by the CUE domain of Vps9p.

Authors:  Gali Prag; Saurav Misra; Eudora A Jones; Rodolfo Ghirlando; Brian A Davies; Bruce F Horazdovsky; James H Hurley
Journal:  Cell       Date:  2003-05-30       Impact factor: 41.582

3.  Sequence determinants of E2-E6AP binding affinity and specificity.

Authors:  Ziad M Eletr; Brian Kuhlman
Journal:  J Mol Biol       Date:  2007-03-19       Impact factor: 5.469

4.  Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5.

Authors:  Sangho Lee; Yien Che Tsai; Rafael Mattera; William J Smith; Michael S Kostelansky; Allan M Weissman; Juan S Bonifacino; James H Hurley
Journal:  Nat Struct Mol Biol       Date:  2006-02-05       Impact factor: 15.369

5.  Different HECT domain ubiquitin ligases employ distinct mechanisms of polyubiquitin chain synthesis.

Authors:  Min Wang; Cecile M Pickart
Journal:  EMBO J       Date:  2005-12-08       Impact factor: 11.598

6.  The ubiquitin binding domain ZnF UBP recognizes the C-terminal diglycine motif of unanchored ubiquitin.

Authors:  Francisca E Reyes-Turcu; John R Horton; James E Mullally; Annie Heroux; Xiaodong Cheng; Keith D Wilkinson
Journal:  Cell       Date:  2006-03-24       Impact factor: 41.582

7.  Distinct functional surface regions on ubiquitin.

Authors:  K E Sloper-Mould; J C Jemc; C M Pickart; L Hicke
Journal:  J Biol Chem       Date:  2001-06-08       Impact factor: 5.157

8.  Conformational flexibility underlies ubiquitin ligation mediated by the WWP1 HECT domain E3 ligase.

Authors:  Mark A Verdecia; Claudio A P Joazeiro; Nicholas J Wells; Jean-Luc Ferrer; Marianne E Bowman; Tony Hunter; Joseph P Noel
Journal:  Mol Cell       Date:  2003-01       Impact factor: 17.970

9.  The HPV-16 E6 and E6-AP complex functions as a ubiquitin-protein ligase in the ubiquitination of p53.

Authors:  M Scheffner; J M Huibregtse; R D Vierstra; P M Howley
Journal:  Cell       Date:  1993-11-05       Impact factor: 41.582

10.  Participation of the ubiquitin-conjugating enzyme UBE2E3 in Nedd4-2-dependent regulation of the epithelial Na+ channel.

Authors:  Christophe Debonneville; Olivier Staub
Journal:  Mol Cell Biol       Date:  2004-03       Impact factor: 4.272

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  149 in total

1.  Identification of primary and secondary UBA footprints on the surface of ubiquitin in cell-mimicking crowded solution.

Authors:  Francesca Munari; Andrea Bortot; Serena Zanzoni; Mariapina D'Onofrio; David Fushman; Michael Assfalg
Journal:  FEBS Lett       Date:  2017-03-19       Impact factor: 4.124

Review 2.  Twists and turns in ubiquitin-like protein conjugation cascades.

Authors:  Brenda A Schulman
Journal:  Protein Sci       Date:  2011-11-09       Impact factor: 6.725

3.  Crystal structures of two bacterial HECT-like E3 ligases in complex with a human E2 reveal atomic details of pathogen-host interactions.

Authors:  David Yin-wei Lin; Jianbo Diao; Jue Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

Review 4.  HECT and RING finger families of E3 ubiquitin ligases at a glance.

Authors:  Meredith B Metzger; Ventzislava A Hristova; Allan M Weissman
Journal:  J Cell Sci       Date:  2012-02-01       Impact factor: 5.285

Review 5.  Using protein motion to read, write, and erase ubiquitin signals.

Authors:  Aaron H Phillips; Jacob E Corn
Journal:  J Biol Chem       Date:  2015-09-09       Impact factor: 5.157

6.  Covalent Tethering of Fragments For Covalent Probe Discovery.

Authors:  Stefan G Kathman; Alexander V Statsyuk
Journal:  Medchemcomm       Date:  2016-01-28       Impact factor: 3.597

7.  Ehrlichia chaffeensis TRP120 Moonlights as a HECT E3 Ligase Involved in Self- and Host Ubiquitination To Influence Protein Interactions and Stability for Intracellular Survival.

Authors:  Bing Zhu; Seema Das; Shubhajit Mitra; Tierra R Farris; Jere W McBride
Journal:  Infect Immun       Date:  2017-08-18       Impact factor: 3.441

Review 8.  Structural and functional insights to ubiquitin-like protein conjugation.

Authors:  Frederick C Streich; Christopher D Lima
Journal:  Annu Rev Biophys       Date:  2014       Impact factor: 12.981

9.  Oligomerization of the HECT ubiquitin ligase NEDD4-2/NEDD4L is essential for polyubiquitin chain assembly.

Authors:  Dustin R Todaro; Allison C Augustus-Wallace; Jennifer M Klein; Arthur L Haas
Journal:  J Biol Chem       Date:  2018-10-04       Impact factor: 5.157

10.  BIRC7-E2 ubiquitin conjugate structure reveals the mechanism of ubiquitin transfer by a RING dimer.

Authors:  Hao Dou; Lori Buetow; Gary J Sibbet; Kenneth Cameron; Danny T Huang
Journal:  Nat Struct Mol Biol       Date:  2012-08-14       Impact factor: 15.369

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