Literature DB >> 2006175

Splice junctions follow a 205-base ladder.

J S Beckmann1, E N Trifonov.   

Abstract

Of all aspects of mRNA maturation the accuracy of intervening sequence excision and exon ligation is, perhaps, the most enigmatic. Attempts to identify the essential elements involved in this process have thus far not yielded any satisfactory answer as to what structural (sequence) features are prerequisite for the vital precision of this process. In our search for underlying structural orders we asked whether exons and introns had any positional preferences within a gene. This analysis led to the unexpected discovery that the DNA length is synchronized between successive 3' splicing sites as well as between successive 5' splicing sites, with a frame of approximately 205 base pairs. This observation reveals additional organization of genes in eukaryotes and, perhaps, links gene splicing with chromatin structure.

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Year:  1991        PMID: 2006175      PMCID: PMC51235          DOI: 10.1073/pnas.88.6.2380

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  7 in total

Review 1.  A survey on intron and exon lengths.

Authors:  J D Hawkins
Journal:  Nucleic Acids Res       Date:  1988-11-11       Impact factor: 16.971

2.  Scanning from an independently specified branch point defines the 3' splice site of mammalian introns.

Authors:  C W Smith; E B Porro; J G Patton; B Nadal-Ginard
Journal:  Nature       Date:  1989-11-16       Impact factor: 49.962

Review 3.  Discontinuous DNA replication.

Authors:  T Ogawa; T Okazaki
Journal:  Annu Rev Biochem       Date:  1980       Impact factor: 23.643

4.  A general function of noncoding polynucleotide sequences. Mass binding of transconformational proteins.

Authors:  E Zuckerkandl
Journal:  Mol Biol Rep       Date:  1981-05-22       Impact factor: 2.316

5.  Nucleotide sequence-directed mapping of the nucleosomes.

Authors:  G Mengeritsky; E N Trifonov
Journal:  Nucleic Acids Res       Date:  1983-06-11       Impact factor: 16.971

6.  Self-assembly of single and closely spaced nucleosome core particles.

Authors:  M Noll; S Zimmer; A Engel; J Dubochet
Journal:  Nucleic Acids Res       Date:  1980-01-11       Impact factor: 16.971

7.  The C proteins of HeLa 40S nuclear ribonucleoprotein particles exist as anisotropic tetramers of (C1)3 C2.

Authors:  S F Barnett; D L Friedman; W M LeStourgeon
Journal:  Mol Cell Biol       Date:  1989-02       Impact factor: 4.272

  7 in total
  18 in total

1.  Statistical analysis and prediction of the exonic structure of human genes.

Authors:  M S Gelfand
Journal:  J Mol Evol       Date:  1992-09       Impact factor: 2.395

2.  Introns of the chicken ovalbumin gene promote nucleosome alignment in vitro.

Authors:  J D Lauderdale; A Stein
Journal:  Nucleic Acids Res       Date:  1992-12-25       Impact factor: 16.971

Review 3.  Revisiting junk DNA.

Authors:  E Zuckerkandl
Journal:  J Mol Evol       Date:  1992-03       Impact factor: 2.395

Review 4.  Chromatin's thread to alternative splicing regulation.

Authors:  Camilla Iannone; Juan Valcárcel
Journal:  Chromosoma       Date:  2013-08-03       Impact factor: 4.316

5.  Nucleosome positioning as a determinant of exon recognition.

Authors:  Hagen Tilgner; Christoforos Nikolaou; Sonja Althammer; Michael Sammeth; Miguel Beato; Juan Valcárcel; Roderic Guigó
Journal:  Nat Struct Mol Biol       Date:  2009-09       Impact factor: 15.369

6.  Chromatin organization marks exon-intron structure.

Authors:  Schraga Schwartz; Eran Meshorer; Gil Ast
Journal:  Nat Struct Mol Biol       Date:  2009-09       Impact factor: 15.369

7.  When chromatin meets splicing.

Authors:  Alberto R Kornblihtt; Ignacio E Schor; Mariano Allo; Benjamin J Blencowe
Journal:  Nat Struct Mol Biol       Date:  2009-09       Impact factor: 15.369

Review 8.  Beyond the histone tale: HP1α deregulation in breast cancer epigenetics.

Authors:  Johan Vad-Nielsen; Anders Lade Nielsen
Journal:  Cancer Biol Ther       Date:  2015       Impact factor: 4.742

9.  Periodicity of strong nucleosome positioning sites around the chicken adult beta-globin gene may encode regularly spaced chromatin.

Authors:  C Davey; S Pennings; G Meersseman; T J Wess; J Allan
Journal:  Proc Natl Acad Sci U S A       Date:  1995-11-21       Impact factor: 11.205

10.  Chromatin and splicing.

Authors:  Nazmul Haque; Shalini Oberdoerffer
Journal:  Methods Mol Biol       Date:  2014
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