Literature DB >> 23912688

Chromatin's thread to alternative splicing regulation.

Camilla Iannone1, Juan Valcárcel.   

Abstract

Intron removal (pre-mRNA splicing) is a necessary step for expression of most genes in higher eukaryotes. Alternative splice site selection is a prevalent mechanism that diversifies genome outputs and offers ample opportunities for gene regulation in these organisms. Pre-mRNA splicing occurs co-transcriptionally and is influenced by features in chromatin structure, including nucleosome density and epigenetic modifications. We review here the molecular mechanisms by which the reciprocal interplay between chromatin and RNA processing can contribute to alternative splicing regulation.

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Year:  2013        PMID： 23912688     DOI： 10.1007/s00412-013-0425-x

Source DB:  PubMed          Journal:  Chromosoma        ISSN： 0009-5915            Impact factor:   4.316


  88 in total

Review 1.  The carboxy terminal domain of RNA polymerase II and alternative splicing.

Authors:  Manuel J Muñoz; Manuel de la Mata; Alberto R Kornblihtt
Journal:  Trends Biochem Sci       Date:  2010-04-24       Impact factor: 13.807

2.  Deciphering the splicing code.

Authors:  Yoseph Barash; John A Calarco; Weijun Gao; Qun Pan; Xinchen Wang; Ofer Shai; Benjamin J Blencowe; Brendan J Frey
Journal:  Nature       Date:  2010-05-06       Impact factor: 49.962

3.  Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing.

Authors:  Robert J Sims; Scott Millhouse; Chi-Fu Chen; Brian A Lewis; Hediye Erdjument-Bromage; Paul Tempst; James L Manley; Danny Reinberg
Journal:  Mol Cell       Date:  2007-11-30       Impact factor: 17.970

4.  DNA damage regulates alternative splicing through inhibition of RNA polymerase II elongation.

Authors:  Manuel J Muñoz; M Soledad Pérez Santangelo; Maria P Paronetto; Manuel de la Mata; Federico Pelisch; Stéphanie Boireau; Kira Glover-Cutter; Claudia Ben-Dov; Matías Blaustein; Juan J Lozano; Gregory Bird; David Bentley; Edouard Bertrand; Alberto R Kornblihtt
Journal:  Cell       Date:  2009-05-15       Impact factor: 41.582

Review 5.  Coupling transcription and alternative splicing.

Authors:  Alberto R Kornblihtt
Journal:  Adv Exp Med Biol       Date:  2007       Impact factor: 2.622

6.  DNA-methylation effect on cotranscriptional splicing is dependent on GC architecture of the exon-intron structure.

Authors:  Sahar Gelfman; Noa Cohen; Ahuvi Yearim; Gil Ast
Journal:  Genome Res       Date:  2013-03-15       Impact factor: 9.043

Review 7.  The spliceosome as a target of novel antitumour drugs.

Authors:  Sophie Bonnal; Luisa Vigevani; Juan Valcárcel
Journal:  Nat Rev Drug Discov       Date:  2012-11       Impact factor: 84.694

8.  Exon tethering in transcription by RNA polymerase II.

Authors:  Michael J Dye; Natalia Gromak; Nick J Proudfoot
Journal:  Mol Cell       Date:  2006-03-17       Impact factor: 17.970

9.  The in vivo kinetics of RNA polymerase II elongation during co-transcriptional splicing.

Authors:  Yehuda Brody; Noa Neufeld; Nicole Bieberstein; Sebastien Z Causse; Eva-Maria Böhnlein; Karla M Neugebauer; Xavier Darzacq; Yaron Shav-Tal
Journal:  PLoS Biol       Date:  2011-01-11       Impact factor: 8.029

10.  Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing.

Authors:  Madapura M Pradeepa; Heidi G Sutherland; Jernej Ule; Graeme R Grimes; Wendy A Bickmore
Journal:  PLoS Genet       Date:  2012-05-17       Impact factor: 5.917
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  24 in total

Review 1.  The pathogenicity of splicing defects: mechanistic insights into pre-mRNA processing inform novel therapeutic approaches.

Authors:  Elisabeth Daguenet; Gwendal Dujardin; Juan Valcárcel
Journal:  EMBO Rep       Date:  2015-11-13       Impact factor: 8.807

2.  Defective histone supply causes changes in RNA polymerase II elongation rate and cotranscriptional pre-mRNA splicing.

Authors:  Silvia Jimeno-González; Laura Payán-Bravo; Ana M Muñoz-Cabello; Macarena Guijo; Gabriel Gutierrez; Félix Prado; José C Reyes
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-17       Impact factor: 11.205

Review 3.  Coupling of RNA Polymerase II Transcription Elongation with Pre-mRNA Splicing.

Authors:  Tassa Saldi; Michael A Cortazar; Ryan M Sheridan; David L Bentley
Journal:  J Mol Biol       Date:  2016-04-20       Impact factor: 5.469

4.  Mechanism of alternative splicing and its regulation.

Authors:  Yan Wang; Jing Liu; B O Huang; Yan-Mei Xu; Jing Li; Lin-Feng Huang; Jin Lin; Jing Zhang; Qing-Hua Min; Wei-Ming Yang; Xiao-Zhong Wang
Journal:  Biomed Rep       Date:  2014-12-17

5.  Convergence of Acquired Mutations and Alternative Splicing of CD19 Enables Resistance to CART-19 Immunotherapy.

Authors:  Elena Sotillo; David M Barrett; Kathryn L Black; Asen Bagashev; Derek Oldridge; Glendon Wu; Robyn Sussman; Claudia Lanauze; Marco Ruella; Matthew R Gazzara; Nicole M Martinez; Colleen T Harrington; Elaine Y Chung; Jessica Perazzelli; Ted J Hofmann; Shannon L Maude; Pichai Raman; Alejandro Barrera; Saar Gill; Simon F Lacey; Jan J Melenhorst; David Allman; Elad Jacoby; Terry Fry; Crystal Mackall; Yoseph Barash; Kristen W Lynch; John M Maris; Stephan A Grupp; Andrei Thomas-Tikhonenko
Journal:  Cancer Discov       Date:  2015-10-29       Impact factor: 39.397

Review 6.  Mechanisms and Regulation of Alternative Pre-mRNA Splicing.

Authors:  Yeon Lee; Donald C Rio
Journal:  Annu Rev Biochem       Date:  2015-03-12       Impact factor: 23.643

Review 7.  Calcium Channel CaVα₁ Splice Isoforms - Tissue Specificity and Drug Action.

Authors:  Diane Lipscombe; Arturo Andrade
Journal:  Curr Mol Pharmacol       Date:  2015       Impact factor: 3.339

Review 8.  Influence of transcriptional variants on metastasis.

Authors:  Joice De Faria Poloni; Diego Bonatto
Journal:  RNA Biol       Date:  2018-07-24       Impact factor: 4.652

9.  DNA methylation rather than single nucleotide polymorphisms regulates the production of an aberrant splice variant of IL6R in mastitic cows.

Authors:  Yan Zhang; Xiuge Wang; Qiang Jiang; Haisheng Hao; Zhihua Ju; Chunhong Yang; Yan Sun; Changfa Wang; Jifeng Zhong; Jinming Huang; Huabin Zhu
Journal:  Cell Stress Chaperones       Date:  2018-01-20       Impact factor: 3.667

Review 10.  Roles for SUMO in pre-mRNA processing.

Authors:  Patrick K Nuro-Gyina; Jeffrey D Parvin
Journal:  Wiley Interdiscip Rev RNA       Date:  2015-11-13       Impact factor: 9.957
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