Literature DB >> 23385759

Crystallization, characterization and preliminary X-ray crystallographic analysis of GK2848, a putative carbonic anhydrase of Geobacillus kaustophilus.

Preethi Ragunathan1, Gokul Raghunath, Seiki Kuramitsu, Shigeyuki Yokoyama, Thirumananseri Kumarevel, Karthe Ponnuraj.   

Abstract

GK2848, a hypothetical protein from the thermophilic organism Geobacillus kaustophilus, was cloned and overexpressed in Escherichia coli. The protein was purified to homogeneity using Ni-NTA affinity-column and gel-filtration chromatography. The purified protein was crystallized using the sitting-drop vapour-diffusion method. The crystals diffracted to a resolution of 2.70 Å and belonged to the orthorhombic space group P2(1)2(1)2. GK2848 bears sequence homology to carbonic anhydrases of various bacterial species, indicating that it belongs to the carbonic anhydrase family of proteins. A subsequent carbonic anhydrase activity assay of GK2848 using the Wilbur-Anderson method confirmed its function as a carbonic anhydrase. A preliminary structure solution was obtained by molecular replacement using MOLREP. Mutation and biochemical characterization of the protein are in progress. The structure and functional analysis of GK2848 might provide valuable information on a novel class of carbonic anhydrases, as none of its homologous structures have been characterized.

Entities:  

Keywords:  Geobacillus kaustophilus; carbonic anhydrases; hypothetical proteins; left-handed β-helix

Mesh:

Substances:

Year:  2013        PMID: 23385759      PMCID: PMC3564620          DOI: 10.1107/S1744309112051913

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

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Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

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Journal:  Biochemistry       Date:  2000-08-08       Impact factor: 3.162

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Journal:  Pharmacol Ther       Date:  1997       Impact factor: 12.310

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Journal:  Nucleic Acids Res       Date:  2004-12-01       Impact factor: 16.971

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Journal:  Curr Pharm Des       Date:  2008       Impact factor: 3.116

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Authors:  Jeyaraman Jeyakanthan; Sarani Rangarajan; P Mridula; Shankar Prasad Kanaujia; Yoshitsugu Shiro; Seiki Kuramitsu; Shigeyuki Yokoyama; Kanagaraj Sekar
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-09-19
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  1 in total

1.  Crystal Structure and Active Site Engineering of a Halophilic γ-Carbonic Anhydrase.

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Journal:  Front Microbiol       Date:  2020-04-28       Impact factor: 5.640

  1 in total

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