Literature DB >> 20056729

Online tools for understanding rat physiology.

Melinda R Dwinell1.   

Abstract

Rat models have been used to investigate physiological and pathophysiological mechanisms for decades. With the availability of the rat genome and other online resources, tools to identify rat models that mimic human disease are an important step in translational research. Despite the large number of papers published each year using rat models, integrating this information remains a problem. Resources for the rat genome are continuing to grow rapidly, while resources providing access to rat phenotype data are just emerging. An overview of rat models of disease, tools to characterize strain by phenotype and genotype, and steps being taken to integrate rat physiological data is presented in this article. Integrating functional and physiological data with the rat genome will build a solid research platform to facilitate innovative studies to unravel the mechanisms resulting in disease.

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Year:  2010        PMID: 20056729      PMCID: PMC2905522          DOI: 10.1093/bib/bbp069

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  24 in total

1.  Positional identification of Ncf1 as a gene that regulates arthritis severity in rats.

Authors:  Peter Olofsson; Jens Holmberg; Jesper Tordsson; Shemin Lu; Bo Akerström; Rikard Holmdahl
Journal:  Nat Genet       Date:  2002-12-02       Impact factor: 38.330

Review 2.  Consomic rat model systems for physiological genomics.

Authors:  A W Cowley; M Liang; R J Roman; A S Greene; H J Jacob
Journal:  Acta Physiol Scand       Date:  2004-08

Review 3.  The mouse as a model for human biology: a resource guide for complex trait analysis.

Authors:  Luanne L Peters; Raymond F Robledo; Carol J Bult; Gary A Churchill; Beverly J Paigen; Karen L Svenson
Journal:  Nat Rev Genet       Date:  2007-01       Impact factor: 53.242

4.  Expressing physiology.

Authors:  Norbert Hubner
Journal:  Nat Genet       Date:  2006-02       Impact factor: 38.330

Review 5.  Progress and prospects in rat genetics: a community view.

Authors:  Timothy J Aitman; John K Critser; Edwin Cuppen; Anna Dominiczak; Xose M Fernandez-Suarez; Jonathan Flint; Dominique Gauguier; Aron M Geurts; Michael Gould; Peter C Harris; Rikard Holmdahl; Norbert Hubner; Zsuzsanna Izsvák; Howard J Jacob; Takashi Kuramoto; Anne E Kwitek; Anna Marrone; Tomoji Mashimo; Carol Moreno; John Mullins; Linda Mullins; Tomas Olsson; Michal Pravenec; Lela Riley; Kathrin Saar; Tadao Serikawa; James D Shull; Claude Szpirer; Simon N Twigger; Birger Voigt; Kim Worley
Journal:  Nat Genet       Date:  2008-05       Impact factor: 38.330

Review 6.  The rat as an experimental animal.

Authors:  T J Gill; G J Smith; R W Wissler; H W Kunz
Journal:  Science       Date:  1989-07-21       Impact factor: 47.728

7.  Rat strain differences in pulmonary artery smooth muscle Ca(2+) entry following chronic hypoxia.

Authors:  Jessica B Snow; Nancy L Kanagy; Benjimen R Walker; Thomas C Resta
Journal:  Microcirculation       Date:  2009-07-22       Impact factor: 2.628

Review 8.  Use of genetically modified rat models for translational medicine.

Authors:  Jean Cozzi; Alexandre Fraichard; Kader Thiam
Journal:  Drug Discov Today       Date:  2008-05-15       Impact factor: 7.851

9.  Influence of diet and genetics on hypertension and renal disease in Dahl salt-sensitive rats.

Authors:  David L Mattson; Mary Pat Kunert; Mary L Kaldunski; Andrew S Greene; Richard J Roman; Howard J Jacob; Allen W Cowley
Journal:  Physiol Genomics       Date:  2004-01-15       Impact factor: 3.107

Review 10.  Long-term effects of the perinatal environment on respiratory control.

Authors:  Ryan W Bavis; Gordon S Mitchell
Journal:  J Appl Physiol (1985)       Date:  2008-01-10
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  7 in total

1.  Cellular resolution functional imaging in behaving rats using voluntary head restraint.

Authors:  Benjamin B Scott; Carlos D Brody; David W Tank
Journal:  Neuron       Date:  2013-09-19       Impact factor: 17.173

2.  Beyond knockout rats: new insights into finer genome manipulation in rats.

Authors:  Guanyi Huang; Chang Tong; Dhruv S Kumbhani; Charles Ashton; Hexin Yan; Qi-Long Ying
Journal:  Cell Cycle       Date:  2011-04-01       Impact factor: 4.534

3.  Comprehensive coverage of cardiovascular disease data in the disease portals at the Rat Genome Database.

Authors:  Shur-Jen Wang; Stanley J F Laulederkind; G Thomas Hayman; Victoria Petri; Jennifer R Smith; Marek Tutaj; Rajni Nigam; Melinda R Dwinell; Mary Shimoyama
Journal:  Physiol Genomics       Date:  2016-06-10       Impact factor: 3.107

4.  The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications.

Authors:  Jennifer R Smith; Carissa A Park; Rajni Nigam; Stanley Jf Laulederkind; G Thomas Hayman; Shur-Jen Wang; Timothy F Lowry; Victoria Petri; Jeff De Pons; Marek Tutaj; Weisong Liu; Elizabeth A Worthey; Mary Shimoyama; Melinda R Dwinell
Journal:  J Biomed Semantics       Date:  2013-10-08

5.  Laminin promotes differentiation of rat embryonic stem cells into cardiomyocytes by activating the integrin/FAK/PI3K p85 pathway.

Authors:  Duo Wang; Yumei Wang; Huan Liu; Chang Tong; Qilong Ying; Agapios Sachinidis; Li Li; Luying Peng
Journal:  J Cell Mol Med       Date:  2019-03-25       Impact factor: 5.310

6.  PhenoMiner: quantitative phenotype curation at the rat genome database.

Authors:  Stanley J F Laulederkind; Weisong Liu; Jennifer R Smith; G Thomas Hayman; Shur-Jen Wang; Rajni Nigam; Victoria Petri; Timothy F Lowry; Jeff de Pons; Melinda R Dwinell; Mary Shimoyama
Journal:  Database (Oxford)       Date:  2013-04-19       Impact factor: 3.451

7.  Species generalization and differences in Hedgehog pathway regulation of fungiform and circumvallate papilla taste function and somatosensation demonstrated with sonidegib.

Authors:  A Kumari; Y Yokota; L Li; R M Bradley; C M Mistretta
Journal:  Sci Rep       Date:  2018-11-01       Impact factor: 4.379

  7 in total

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