Literature DB >> 20052155

High throughput transmission optical projection tomography using low cost graphics processing unit.

Claudio Vinegoni1, Lyuba Fexon, Paolo Fumene Feruglio, Misha Pivovarov, Jose-Luiz Figueiredo, Matthias Nahrendorf, Antonio Pozzo, Andrea Sbarbati, Ralph Weissleder.   

Abstract

We implement the use of a graphics processing unit (GPU) in order to achieve real time data processing for high-throughput transmission optical projection tomography imaging. By implementing the GPU we have obtained a 300 fold performance enhancement in comparison to a CPU workstation implementation. This enables to obtain on-the-fly reconstructions enabling for high throughput imaging.

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Year:  2009        PMID： 20052155      PMCID： PMC2805020          DOI： 10.1364/OE.17.022320

Source DB:  PubMed          Journal:  Opt Express        ISSN： 1094-4087            Impact factor:   3.894


  11 in total

1.  Direct Fourier transform techniques in 3-D image reconstruction.

Authors:  R M Mersereau
Journal:  Comput Biol Med       Date:  1976-10       Impact factor: 4.589

Review 2.  Looking and listening to light: the evolution of whole-body photonic imaging.

Authors:  Vasilis Ntziachristos; Jorge Ripoll; Lihong V Wang; Ralph Weissleder
Journal:  Nat Biotechnol       Date:  2005-03       Impact factor: 54.908

3.  In vivo imaging of Drosophila melanogaster pupae with mesoscopic fluorescence tomography.

Authors:  Claudio Vinegoni; Chrysoula Pitsouli; Daniel Razansky; Norbert Perrimon; Vasilis Ntziachristos
Journal:  Nat Methods       Date:  2007-12-09       Impact factor: 28.547

4.  GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration.

Authors:  G C Sharp; N Kandasamy; H Singh; M Folkert
Journal:  Phys Med Biol       Date:  2007-09-10       Impact factor: 3.609

5.  Fast, high-resolution 3D dosimetry utilizing a novel optical-CT scanner incorporating tertiary telecentric collimation.

Authors:  H S Sakhalkar; M Oldham
Journal:  Med Phys       Date:  2008-01       Impact factor: 4.071

6.  A fast sinc function gridding algorithm for fourier inversion in computer tomography.

Authors:  J D O'Sullivan
Journal:  IEEE Trans Med Imaging       Date:  1985       Impact factor: 10.048

7.  The gridding method for image reconstruction by Fourier transformation.

Authors:  H Schomberg; J Timmer
Journal:  IEEE Trans Med Imaging       Date:  1995       Impact factor: 10.048

8.  A high-speed reconstruction from projections using direct Fourier method with optimized parameters-an experimental analysis.

Authors:  S Matej; I Bajla
Journal:  IEEE Trans Med Imaging       Date:  1990       Impact factor: 10.048

9.  Real-time digital holographic microscopy using the graphic processing unit.

Authors:  Tomoyoshi Shimobaba; Yoshikuni Sato; Junya Miura; Mai Takenouchi; Tomoyoshi Ito
Journal:  Opt Express       Date:  2008-08-04       Impact factor: 3.894

10.  An investigation of computerized tomography by direct Fourier inversion and optimum interpolation.

Authors:  H Stark; J W Woods; I Paul; R Hingorani
Journal:  IEEE Trans Biomed Eng       Date:  1981-07       Impact factor: 4.538
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  9 in total

1.  Applicability, usability, and limitations of murine embryonic imaging with optical coherence tomography and optical projection tomography.

Authors:  Manmohan Singh; Raksha Raghunathan; Victor Piazza; Anjul M Davis-Loiacono; Alex Cable; Tegy J Vedakkan; Trevor Janecek; Michael V Frazier; Achuth Nair; Chen Wu; Irina V Larina; Mary E Dickinson; Kirill V Larin
Journal:  Biomed Opt Express       Date:  2016-05-19       Impact factor: 3.732

2.  Imaging of molecular probe activity with Born-normalized fluorescence optical projection tomography.

Authors:  Claudio Vinegoni; Paolo Fumene Feruglio; Virna Cortez-Retamozo; Daniel Razansky; Benjamin D Medoff; Vasilis Ntziachristos; Andrea Sbarbati; Mikael Pittet; Ralph Weissleder
Journal:  Opt Lett       Date:  2010-04-01       Impact factor: 3.776

3.  Optical projection tomography for rapid whole mouse brain imaging.

Authors:  David Nguyen; Paul J Marchand; Arielle L Planchette; Julia Nilsson; Miguel Sison; Jérôme Extermann; Antonio Lopez; Marcin Sylwestrzak; Jessica Sordet-Dessimoz; Anja Schmidt-Christensen; Dan Holmberg; Dimitri Van De Ville; Theo Lasser
Journal:  Biomed Opt Express       Date:  2017-11-15       Impact factor: 3.732

4.  Block matching 3D random noise filtering for absorption optical projection tomography.

Authors:  P Fumene Feruglio; C Vinegoni; J Gros; A Sbarbati; R Weissleder
Journal:  Phys Med Biol       Date:  2010-08-25       Impact factor: 3.609

Review 5.  Whole-animal imaging, gene function, and the Zebrafish Phenome Project.

Authors:  Keith C Cheng; Xuying Xin; Darin P Clark; Patrick La Riviere
Journal:  Curr Opin Genet Dev       Date:  2011-09-28       Impact factor: 5.578

6.  Scanning laser optical tomography resolves structural plasticity during regeneration in an insect brain.

Authors:  René Eickhoff; Raoul-Amadeus Lorbeer; Hannah Scheiblich; Alexander Heisterkamp; Heiko Meyer; Michael Stern; Gerd Bicker
Journal:  PLoS One       Date:  2012-07-19       Impact factor: 3.240

7.  Correction for specimen movement and rotation errors for in-vivo Optical Projection Tomography.

Authors:  Udo Jochen Birk; Matthias Rieckher; Nikos Konstantinides; Alex Darrell; Ana Sarasa-Renedo; Heiko Meyer; Nektarios Tavernarakis; Jorge Ripoll
Journal:  Biomed Opt Express       Date:  2010-07-14       Impact factor: 3.732

8.  GPU-Accelerated Finite Element Method for Modelling Light Transport in Diffuse Optical Tomography.

Authors:  Martin Schweiger
Journal:  Int J Biomed Imaging       Date:  2011-10-16

9.  Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae.

Authors:  Chuyi Chen; Yuyang Gu; Julien Philippe; Peiran Zhang; Hunter Bachman; Jinxin Zhang; John Mai; Joseph Rufo; John F Rawls; Erica E Davis; Nicholas Katsanis; Tony Jun Huang
Journal:  Nat Commun       Date:  2021-02-18       Impact factor: 17.694
  9 in total

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