Literature DB >> 20047006

An Effective Hamiltonian Molecular Orbital-Valence Bond (MOVB) Approach for Chemical Reactions Applied to the Nucleophilic Substitution Reaction of Hydrosulfide Ion and Chloromethane.

Lingchun Song1, Yirong Mo, Jiali Gao.   

Abstract

An effective Hamiltonian mixed molecular orbital and valence bond (EH-MOVB) method is described to obtain an accurate potential energy surface for chemical reactions. Building upon previous results on the construction of diabatic and adiabatic potential surfaces using ab initio MOVB theory, we introduce a diabatic-coupling scaling factor to uniformly scale the ab initio off-diagonal matrix element H(12) such that the computed energy of reaction from the EH-MOVB method is in agreement with the target value. The scaling factor is very close to unity, resulting in minimal alteration of the potential energy surface of the original MOVB model. Furthermore, the relative energy between the reactant and product diabatic states in the EH-MOVB method can be improved to match the experimental energy of reaction. A key ingredient in the EH-MOVB theory is that the off-diagonal matrix elements are functions of all degrees of freedom of the system and the overlap matrix is explicitly evaluated. The EH-MOVB method has been applied to the nucleophilic substitution reaction between hydrosulfide and chloromethane to illustrate the methodology and the results were matched to reproduce the results from ab initio valence bond self-consistent valence bond (VBSCF) calculations. The diabatic coupling (the off-diagonal matrix element in the generalized secular equation) has small variations along the minimum energy reaction path in the EH-MOVB model, whereas it shows a maximum value at the transition state and has nearly zero values in the regions of the ion-dipole complexes from VBSCF calculations. The difference in the diabatic coupling stabilization is attributed to the large overlap integral in the computationally efficient MOVB method.

Entities:  

Year:  2009        PMID: 20047006      PMCID: PMC2658615          DOI: 10.1021/ct800421y

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  19 in total

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2.  The magnitude of hyperconjugation in ethane: a perspective from ab initio valence bond theory.

Authors:  Yirong Mo; Wei Wu; Lingchun Song; Menghai Lin; Qianer Zhang; Jiali Gao
Journal:  Angew Chem Int Ed Engl       Date:  2004-04-02       Impact factor: 15.336

3.  Empirical Valence-Bond Models for Reactive Potential Energy Surfaces Using Distributed Gaussians.

Authors:  H Bernhard Schlegel; Jason L Sonnenberg
Journal:  J Chem Theory Comput       Date:  2006-07       Impact factor: 6.006

4.  Using the constrained DFT approach in generating diabatic surfaces and off diagonal empirical valence bond terms for modeling reactions in condensed phases.

Authors:  Gongyi Hong; Edina Rosta; Arieh Warshel
Journal:  J Phys Chem B       Date:  2006-10-05       Impact factor: 2.991

5.  Theoretical analysis of the rotational barrier of ethane.

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Journal:  Acc Chem Res       Date:  2007-02       Impact factor: 22.384

6.  The Menshutkin reaction in the gas phase and in aqueous solution: a valence bond study.

Authors:  Peifeng Su; Fuming Ying; Wei Wu; Philippe C Hiberty; Sason Shaik
Journal:  Chemphyschem       Date:  2007-12-21       Impact factor: 3.102

7.  Unravelling the origin of intermolecular interactions using absolutely localized molecular orbitals.

Authors:  Rustam Z Khaliullin; Erika A Cobar; Rohini C Lochan; Alexis T Bell; Martin Head-Gordon
Journal:  J Phys Chem A       Date:  2007-07-27       Impact factor: 2.781

8.  Density embedded VB/MM: a hybrid ab initio VB/MM with electrostatic embedding.

Authors:  Avital Sharir-Ivry; Hadar A Crown; Wei Wu; Avital Shurki
Journal:  J Phys Chem A       Date:  2008-02-23       Impact factor: 2.781

9.  Amine-hydrogen halide complexes: experimental electric dipole moments and a theoretical decomposition of dipole moments and binding energies.

Authors:  Carolyn S Brauer; Matthew B Craddock; Jacob Kilian; Erik M Grumstrup; M Christopher Orilall; Yirong Mo; Jiali Gao; Kenneth R Leopold
Journal:  J Phys Chem A       Date:  2006-08-24       Impact factor: 2.781

10.  Quantifying free energy profiles of proton transfer reactions in solution and proteins by using a diabatic FDFT mapping.

Authors:  Yun Xiang; Arieh Warshel
Journal:  J Phys Chem B       Date:  2008-01-01       Impact factor: 2.991

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  8 in total

1.  Multistate Density Functional Theory for Effective Diabatic Electronic Coupling.

Authors:  Haisheng Ren; Makenzie R Provorse; Peng Bao; Zexing Qu; Jiali Gao
Journal:  J Phys Chem Lett       Date:  2016-06-07       Impact factor: 6.475

Review 2.  Energy decomposition analysis based on a block-localized wavefunction and multistate density functional theory.

Authors:  Yirong Mo; Peng Bao; Jiali Gao
Journal:  Phys Chem Chem Phys       Date:  2011-03-02       Impact factor: 3.676

3.  Two Aromatic Rings Coupled a Sulfur-Containing Group to Favor Protein Electron Transfer by Instantaneous Formations of π∴S:π↔π:S∴π or π∴π:S↔π:π∴S Five-Electron Bindings.

Authors:  Weichao Sun; Haisheng Ren; Ye Tao; Dong Xiao; Xin Qin; Li Deng; Mengyao Shao; Jiali Gao; Xiaohua Chen
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2015-04-30       Impact factor: 4.126

4.  Block-Localized Density Functional Theory (BLDFT), Diabatic Coupling, and Their Use in Valence Bond Theory for Representing Reactive Potential Energy Surfaces.

Authors:  Alessandro Cembran; Lingchun Song; Yirong Mo; Jiali Gao
Journal:  J Chem Theory Comput       Date:  2009-10-13       Impact factor: 6.006

5.  A New Type of Electron Relay Station in Proteins: Three-Piece S:Π∴S↔S∴Π:S Resonance Structure.

Authors:  Weichao Sun; Mengyao Shao; Haisheng Ren; Dong Xiao; Xin Qin; Li Deng; Xiaohua Chen; Jiali Gao
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2015-03-06       Impact factor: 4.126

6.  A Non-Orthogonal Block-Localized Effective Hamiltonian Approach for Chemical and Enzymatic Reactions.

Authors:  Alessandro Cembran; Apirak Payaka; Yen-Lin Lin; Wangshen Xie; Yirong Mo; Lingchun Song; Jiali Gao
Journal:  J Chem Theory Comput       Date:  2010-07-13       Impact factor: 6.006

7.  Minimal Active Space for Diradicals Using Multistate Density Functional Theory.

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Journal:  Molecules       Date:  2022-05-27       Impact factor: 4.927

8.  Combined Multistate and Kohn-Sham Density Functional Theory Studies of the Elusive Mechanism of N-Dealkylation of N,N-Dimethylanilines Mediated by the Biomimetic Nonheme Oxidant FeIV(O)(N4Py)(ClO4)2.

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Journal:  Front Chem       Date:  2018-09-10       Impact factor: 5.221

  8 in total

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