Literature DB >> 11971733

Cation-pi interactions: an energy decomposition analysis and its implication in delta-opioid receptor-ligand binding.

Yirong Mo1, Govindan Subramanian, Jiali Gao, David M Ferguson.   

Abstract

The nature and strength of the cation-pi interaction in protein-ligand binding are modeled by considering a series of nonbonded complexes involving N-substituted piperidines and substituted monocylic aromatics that mimic the delta-opioid receptor-ligand binding. High-level ab initio quantum mechanical calculations confirm the importance of such cation-pi interactions, whose intermolecular interaction energy ranges from -6 to -12 kcal/mol. A better understanding of the electrostatics, polarization, and other intermolecular interactions is obtained by appropriately decomposing the total interaction energy into their individual components. The energy decomposition analysis is also useful for parametrizing existing molecular mechanics force fields that could then account for energetic contributions arising out of cation-pi interactions in biomolecules. The present results further provide a framework for interpreting experimental results from point mutation reported for the delta-opioid receptor.

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Year:  2002        PMID: 11971733     DOI: 10.1021/ja0174433

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  16 in total

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6.  On the construction of diabatic and adiabatic potential energy surfaces based on ab initio valence bond theory.

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Review 7.  A medicinal chemist's guide to molecular interactions.

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9.  An Effective Hamiltonian Molecular Orbital-Valence Bond (MOVB) Approach for Chemical Reactions Applied to the Nucleophilic Substitution Reaction of Hydrosulfide Ion and Chloromethane.

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Journal:  J Chem Theory Comput       Date:  2009-01-01       Impact factor: 6.006

10.  Perspective on Diabatic Models of Chemical Reactivity as Illustrated by the Gas-Phase S(N)2 Reaction of Acetate Ion with 1,2-Dichloroethane.

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Journal:  J Chem Theory Comput       Date:  2009-01-01       Impact factor: 6.006

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