Literature DB >> 20033124

A multidisciplinary study of archaeological grape seeds.

Enrico Cappellini1, M Thomas P Gilbert, Filippo Geuna, Girolamo Fiorentino, Allan Hall, Jane Thomas-Oates, Peter D Ashton, David A Ashford, Paul Arthur, Paula F Campos, Johan Kool, Eske Willerslev, Matthew J Collins.   

Abstract

We report here the first integrated investigation of both ancient DNA and proteins in archaeobotanical samples: medieval grape (Vitis vinifera L.) seeds, preserved by anoxic waterlogging, from an early medieval (seventh-eighth century A.D.) Byzantine rural settlement in the Salento area (Lecce, Italy) and a late (fourteenth-fifteenth century A.D.) medieval site in York (England). Pyrolysis gas chromatography mass spectrometry documented good carbohydrate preservation, whilst amino acid analysis revealed approximately 90% loss of the original protein content. In the York sample, mass spectrometry-based sequencing identified several degraded ancient peptides. Nuclear microsatellite locus (VVS2, VVMD5, VVMD7, ZAG62 and ZAG79) analysis permitted a tentative comparison of the genetic profiles of both the ancient samples with the modern varieties. The ability to recover microsatellite DNA has potential to improve biomolecular analysis on ancient grape seeds from archaeological contexts. Although the investigation of five microsatellite loci cannot assign the ancient samples to any geographic region or modern cultivar, the results allow speculation that the material from York was not grown locally, whilst the remains from Supersano could represent a trace of contacts with the eastern Mediterranean.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 20033124      PMCID: PMC2812422          DOI: 10.1007/s00114-009-0629-3

Source DB:  PubMed          Journal:  Naturwissenschaften        ISSN: 0028-1042


  51 in total

1.  Identification of microsatellite sequences in Vitis riparia and their applicability for genotyping of different Vitis species.

Authors:  K M Sefc; F Regner; E Turetschek; J Glössl; H Steinkellner
Journal:  Genome       Date:  1999-06       Impact factor: 2.166

2.  Neanderthal DNA. Not just old but old and cold?

Authors:  C I Smith; A T Chamberlain; M S Riley; A Cooper; C B Stringer; M J Collins
Journal:  Nature       Date:  2001-04-12       Impact factor: 49.962

Review 3.  Racemization of aspartic acid in human proteins.

Authors:  Stefanie Ritz-Timme; Matthew J Collins
Journal:  Ageing Res Rev       Date:  2002-02       Impact factor: 10.895

4.  Development of a standard set of microsatellite reference alleles for identification of grape cultivars.

Authors:  P This; A Jung; P Boccacci; J Borrego; R Botta; L Costantini; M Crespan; G S Dangl; C Eisenheld; F Ferreira-Monteiro; S Grando; J Ibáñez; T Lacombe; V Laucou; R Magalhães; C P Meredith; N Milani; E Peterlunger; F Regner; L Zulini; E Maul
Journal:  Theor Appl Genet       Date:  2004-09-30       Impact factor: 5.699

5.  Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence-tagged sites (STSs).

Authors:  M R Thomas; N S Scott
Journal:  Theor Appl Genet       Date:  1993-09       Impact factor: 5.699

6.  Kinetics and mechanism of the cleavage of the peptide bond next to asparagine.

Authors:  S Capasso; L Mazzarella; G Sorrentino; G Balboni; A J Kirby
Journal:  Peptides       Date:  1996       Impact factor: 3.750

7.  The parentage of a classic wine grape, Cabernet Sauvignon.

Authors:  J E Bowers; C P Meredith
Journal:  Nat Genet       Date:  1997-05       Impact factor: 38.330

8.  Proteomic investigation of the effect of salicylic acid on Arabidopsis seed germination and establishment of early defense mechanisms.

Authors:  Loïc Rajjou; Maya Belghazi; Romain Huguet; Caroline Robin; Adrien Moreau; Claudette Job; Dominique Job
Journal:  Plant Physiol       Date:  2006-05-05       Impact factor: 8.340

9.  The role of the cyclic imide in alternate degradation pathways for asparagine-containing peptides and proteins.

Authors:  Michael P Dehart; Bradley D Anderson
Journal:  J Pharm Sci       Date:  2007-10       Impact factor: 3.534

10.  Closed-system behaviour of the intra-crystalline fraction of amino acids in mollusc shells.

Authors:  K E H Penkman; D S Kaufman; D Maddy; M J Collins
Journal:  Quat Geochronol       Date:  2008-02       Impact factor: 2.865

View more
  13 in total

1.  Paleoproteomic study of the Iceman's brain tissue.

Authors:  Frank Maixner; Thorsten Overath; Dennis Linke; Marek Janko; Gea Guerriero; Bart H J van den Berg; Bjoern Stade; Petra Leidinger; Christina Backes; Marta Jaremek; Benny Kneissl; Benjamin Meder; Andre Franke; Eduard Egarter-Vigl; Eckart Meese; Andreas Schwarz; Andreas Tholey; Albert Zink; Andreas Keller
Journal:  Cell Mol Life Sci       Date:  2013-06-06       Impact factor: 9.261

2.  Whole genome amplification and microsatellite genotyping of herbarium DNA revealed the identity of an ancient grapevine cultivar.

Authors:  Nenad Malenica; Silvio Simon; Višnja Besendorfer; Edi Maletić; Jasminka Karoglan Kontić; Ivan Pejić
Journal:  Naturwissenschaften       Date:  2011-07-22

3.  Exotic foods reveal contact between South Asia and the Near East during the second millennium BCE.

Authors:  Ashley Scott; Robert C Power; Victoria Altmann-Wendling; Michal Artzy; Mario A S Martin; Stefanie Eisenmann; Richard Hagan; Domingo C Salazar-García; Yossi Salmon; Dmitry Yegorov; Ianir Milevski; Israel Finkelstein; Philipp W Stockhammer; Christina Warinner
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-21       Impact factor: 11.205

Review 4.  Paleoproteomics.

Authors:  Christina Warinner; Kristine Korzow Richter; Matthew J Collins
Journal:  Chem Rev       Date:  2022-07-15       Impact factor: 72.087

5.  Archaeobotanical and chemical investigations on wine amphorae from San Felice Circeo (Italy) shed light on grape beverages at the Roman time.

Authors:  Louise Chassouant; Alessandra Celant; Chiara Delpino; Federico Di Rita; Cathy Vieillescazes; Carole Mathe; Donatella Magri
Journal:  PLoS One       Date:  2022-06-29       Impact factor: 3.752

Review 6.  Back to the Origins: Background and Perspectives of Grapevine Domestication.

Authors:  Fabrizio Grassi; Gabriella De Lorenzis
Journal:  Int J Mol Sci       Date:  2021-04-26       Impact factor: 5.923

7.  Choosing the best plant for the job: a cost-effective assay to prescreen ancient plant remains destined for shotgun sequencing.

Authors:  Nathan Wales; J Alberto Romero-Navarro; Enrico Cappellini; M Thomas P Gilbert
Journal:  PLoS One       Date:  2012-09-20       Impact factor: 3.240

8.  Ancient DNA from lake sediments: bridging the gap between paleoecology and genetics.

Authors:  Lynn L Anderson-Carpenter; Jason S McLachlan; Stephen T Jackson; Melanie Kuch; Candice Y Lumibao; Hendrik N Poinar
Journal:  BMC Evol Biol       Date:  2011-01-27       Impact factor: 3.260

9.  High-Throughput DNA sequencing of ancient wood.

Authors:  Stefanie Wagner; Frédéric Lagane; Andaine Seguin-Orlando; Mikkel Schubert; Thibault Leroy; Erwan Guichoux; Emilie Chancerel; Inger Bech-Hebelstrup; Vincent Bernard; Cyrille Billard; Yves Billaud; Matthias Bolliger; Christophe Croutsch; Katarina Čufar; Frédérique Eynaud; Karl Uwe Heussner; Joachim Köninger; Fabien Langenegger; Frédéric Leroy; Christine Lima; Nicoletta Martinelli; Garry Momber; André Billamboz; Oliver Nelle; Antoni Palomo; Raquel Piqué; Marianne Ramstein; Roswitha Schweichel; Harald Stäuble; Willy Tegel; Xavier Terradas; Florence Verdin; Christophe Plomion; Antoine Kremer; Ludovic Orlando
Journal:  Mol Ecol       Date:  2018-03-03       Impact factor: 6.185

10.  Optimization of DNA recovery and amplification from non-carbonized archaeobotanical remains.

Authors:  Nathan Wales; Kenneth Andersen; Enrico Cappellini; María C Avila-Arcos; M Thomas P Gilbert
Journal:  PLoS One       Date:  2014-01-27       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.