Literature DB >> 20031580

Common genetic variants on chromosome 9p21 confers risk of ischemic stroke: a large-scale genetic association study.

J Gustav Smith1, Olle Melander, Håkan Lövkvist, Bo Hedblad, Gunnar Engström, Peter Nilsson, Joyce Carlson, Göran Berglund, Bo Norrving, Arne Lindgren.   

Abstract

BACKGROUND: Epidemiological studies indicate a genetic contribution to ischemic stroke risk, but specific genetic variants remain unknown, with the exception of a few rare variants. Recent genome-wide association studies identified and replicated common genetic variants on chromosome 9p21 to confer risk of coronary heart disease. We examined whether these variants are associated with ischemic stroke. METHODS AND
RESULTS: We genotyped 6 common genetic variants on chromosome 9p21, previously associated with coronary artery disease in genome-wide association studies, in 2 population-based studies in southern Sweden, the Lund Stroke Register (n=1837 cases, 947 controls) and the Malmö Diet and Cancer study (MDC; n=888 cases, 893 controls). We examined association in each study and in the pooled dataset. Adjustments were made for cardiovascular risk factors and further for previous myocardial infarction in MDC. We found a modest increase in ischemic stroke risk for 2 common (minor allele frequencies 0.46 to 0.49) variants, rs2383207 (P=0.04 in Lund Stroke Register, P=0.01 in MDC) and rs10757274 (P=0.03 in Lund Stroke Register, P=0.03 in MDC), in each sample independently. The strength of the association increased when samples were pooled with an odds ratio of 1.15 (95% CI, 1.05 to 1.25; P=0.002) for the strongest variant rs2383207. Results were similar after adjustment for clinical covariates. rs1333049 also showed significant association in MDC, which increased in the pooled sample (P=0.004).
CONCLUSIONS: In this large sample (n=4565), we detected common genetic determinants for ischemic stroke on chromosome 9p21. Our findings indicate that ischemic stroke shares pathophysiological determinants with coronary heart disease and other arterial diseases and highlight the need for large sample sizes in stroke genetics.

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Year:  2009        PMID: 20031580     DOI: 10.1161/CIRCGENETICS.108.835173

Source DB:  PubMed          Journal:  Circ Cardiovasc Genet        ISSN: 1942-3268


  34 in total

1.  New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing.

Authors:  Andreas Keller; Angela Graefen; Markus Ball; Mark Matzas; Valesca Boisguerin; Frank Maixner; Petra Leidinger; Christina Backes; Rabab Khairat; Michael Forster; Björn Stade; Andre Franke; Jens Mayer; Jessica Spangler; Stephen McLaughlin; Minita Shah; Clarence Lee; Timothy T Harkins; Alexander Sartori; Andres Moreno-Estrada; Brenna Henn; Martin Sikora; Ornella Semino; Jacques Chiaroni; Siiri Rootsi; Natalie M Myres; Vicente M Cabrera; Peter A Underhill; Carlos D Bustamante; Eduard Egarter Vigl; Marco Samadelli; Giovanna Cipollini; Jan Haas; Hugo Katus; Brian D O'Connor; Marc R J Carlson; Benjamin Meder; Nikolaus Blin; Eckart Meese; Carsten M Pusch; Albert Zink
Journal:  Nat Commun       Date:  2012-02-28       Impact factor: 14.919

Review 2.  Genome-wide association studies of late-onset cardiovascular disease.

Authors:  J Gustav Smith; Christopher Newton-Cheh
Journal:  J Mol Cell Cardiol       Date:  2015-04-11       Impact factor: 5.000

3.  A large-sample assessment of possible association between ischaemic stroke and rs12188950 in the PDE4D gene.

Authors:  Håkan Lövkvist; Sandra Olsson; Peter Höglund; Olle Melander; Christina Jern; Marketa Sjögren; Gunnar Engström; J Gustav Smith; Bo Hedblad; Gunnar Andsberg; Hossein Delavaran; Katarina Jood; Ulf Kristoffersson; Holger Luthman; Bo Norrving; Arne Lindgren
Journal:  Eur J Hum Genet       Date:  2012-01-25       Impact factor: 4.246

4.  Chromosome 9p21.3 Variants Are Associated with Cerebral Infarction in Chinese Population.

Authors:  Xuanye Yue; Lili Tian; Xinying Fan; Gelin Xu; Fu-Dong Shi; Xinfeng Liu
Journal:  J Mol Neurosci       Date:  2015-02-11       Impact factor: 3.444

5.  The rs1333049 polymorphism on locus 9p21.3 and extreme longevity in Spanish and Japanese cohorts.

Authors:  Tomàs Pinós; Noriyuki Fuku; Yolanda Cámara; Yasumichi Arai; Yukiko Abe; Gabriel Rodríguez-Romo; Nuria Garatachea; Alejandro Santos-Lozano; Elisabet Miro-Casas; Marisol Ruiz-Meana; Imanol Otaegui; Haruka Murakami; Motohiko Miyachi; David Garcia-Dorado; Kunihiko Hinohara; Antoni L Andreu; Akinori Kimura; Nobuyoshi Hirose; Alejandro Lucia
Journal:  Age (Dordr)       Date:  2013-10-28

6.  LncRNA ANRIL Expression and ANRIL Gene Polymorphisms Contribute to the Risk of Ischemic Stroke in the Chinese Han Population.

Authors:  Jialei Yang; Lian Gu; Xiaojing Guo; Jiao Huang; Zhaoxia Chen; Guifeng Huang; Yiwen Kang; Xiaoting Zhang; Jianxiong Long; Li Su
Journal:  Cell Mol Neurobiol       Date:  2018-06-07       Impact factor: 5.046

7.  Genetics of coronary artery disease: focus on genome-wide association studies.

Authors:  Linnea M Baudhuin
Journal:  Am J Transl Res       Date:  2009-03-05       Impact factor: 4.060

Review 8.  Genetics of coronary artery disease: discovery, biology and clinical translation.

Authors:  Amit V Khera; Sekar Kathiresan
Journal:  Nat Rev Genet       Date:  2017-03-13       Impact factor: 53.242

9.  Expression of linear and novel circular forms of an INK4/ARF-associated non-coding RNA correlates with atherosclerosis risk.

Authors:  Christin E Burd; William R Jeck; Yan Liu; Hanna K Sanoff; Zefeng Wang; Norman E Sharpless
Journal:  PLoS Genet       Date:  2010-12-02       Impact factor: 5.917

10.  Genetic variants associated with myocardial infarction in the PSMA6 gene and Chr9p21 are also associated with ischaemic stroke.

Authors:  M G Heckman; A I Soto-Ortolaza; N N Diehl; S Rayaprolu; T G Brott; Z K Wszolek; J F Meschia; O A Ross
Journal:  Eur J Neurol       Date:  2012-08-06       Impact factor: 6.089

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