Literature DB >> 20028763

A group of genome-based biomarkers that add to a Kattan nomogram for predicting progression in men with high-risk prostate cancer.

Pamela L Paris1, Vivian Weinberg, Giancarlo Albo, Ritu Roy, Catherine Burke, Jeffry Simko, Peter Carroll, Colin Collins.   

Abstract

PURPOSE: The three main treatment options for primary prostate cancer are surgery, radiation, and active surveillance. Surgical and radiation intervention for prostate cancer can be associated with significant morbidity. Therefore, accurate stratification predictive of outcome for prostate cancer patients is essential for appropriate treatment decisions. Nomograms that use clinical and pathologic variables are often used for risk prediction. Favorable outcomes exist even among men classified by nomograms as being at high risk of recurrence. EXPERIMENTAL
DESIGN: Previously, we identified a set of DNA-based biomarkers termed Genomic Evaluators of Metastatic Prostate Cancer (GEMCaP) and have shown that they can predict risk of recurrence with 80% accuracy. Here, we examined the risk prediction ability of GEMCaP in a high-risk cohort and compared it to a Kattan nomogram.
RESULTS: We determined that the GEMCaP genotype alone is comparable with the nomogram, and that for a subset of cases with negative lymph nodes improves upon it.
CONCLUSION: Thus, GEMCaP shows promise for predicting unfavorable outcomes for negative lymph node high-risk cases, where the nomogram falls short, and suggests that addition of GEMCaP to nomograms may be warranted.

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Year:  2009        PMID: 20028763      PMCID: PMC2854027          DOI: 10.1158/1078-0432.CCR-09-0948

Source DB:  PubMed          Journal:  Clin Cancer Res        ISSN: 1078-0432            Impact factor:   12.531


  12 in total

1.  Fully automatic quantification of microarray image data.

Authors:  Ajay N Jain; Taku A Tokuyasu; Antoine M Snijders; Richard Segraves; Donna G Albertson; Daniel Pinkel
Journal:  Genome Res       Date:  2002-02       Impact factor: 9.043

2.  Circular binary segmentation for the analysis of array-based DNA copy number data.

Authors:  Adam B Olshen; E S Venkatraman; Robert Lucito; Michael Wigler
Journal:  Biostatistics       Date:  2004-10       Impact factor: 5.899

3.  A comparison study: applying segmentation to array CGH data for downstream analyses.

Authors:  Hanni Willenbrock; Jane Fridlyand
Journal:  Bioinformatics       Date:  2005-09-13       Impact factor: 6.937

4.  A preoperative nomogram for disease recurrence following radical prostatectomy for prostate cancer.

Authors:  M W Kattan; J A Eastham; A M Stapleton; T M Wheeler; P T Scardino
Journal:  J Natl Cancer Inst       Date:  1998-05-20       Impact factor: 13.506

5.  Postoperative nomogram for disease recurrence after radical prostatectomy for prostate cancer.

Authors:  M W Kattan; T M Wheeler; P T Scardino
Journal:  J Clin Oncol       Date:  1999-05       Impact factor: 44.544

6.  A catalog of prostate cancer nomograms.

Authors:  P L Ross; P T Scardino; M W Kattan
Journal:  J Urol       Date:  2001-05       Impact factor: 7.450

7.  High-resolution analysis of paraffin-embedded and formalin-fixed prostate tumors using comparative genomic hybridization to genomic microarrays.

Authors:  Pamela L Paris; Donna G Albertson; Janneke C Alers; Armann Andaya; Peter Carroll; Jane Fridlyand; Ajay N Jain; Sherwin Kamkar; David Kowbel; Pieter-Jaap Krijtenburg; Daniel Pinkel; Fritz H Schröder; Kees J Vissers; Vivienne J E Watson; Mark F Wildhagen; Colin Collins; Herman Van Dekken
Journal:  Am J Pathol       Date:  2003-03       Impact factor: 4.307

8.  The addition of interleukin-6 soluble receptor and transforming growth factor beta1 improves a preoperative nomogram for predicting biochemical progression in patients with clinically localized prostate cancer.

Authors:  Michael W Kattan; Shahrokh F Shariat; Ben Andrews; Kuichun Zhu; Eduardo Canto; Kazumasa Matsumoto; Masatoshi Muramoto; Peter T Scardino; Makoto Ohori; Thomas M Wheeler; Kevin M Slawin
Journal:  J Clin Oncol       Date:  2003-08-11       Impact factor: 44.544

9.  Whole genome scanning identifies genotypes associated with recurrence and metastasis in prostate tumors.

Authors:  Pamela L Paris; Armann Andaya; Jane Fridlyand; Ajay N Jain; Vivian Weinberg; David Kowbel; John H Brebner; Jeff Simko; J E Vivienne Watson; Stas Volik; Donna G Albertson; Daniel Pinkel; Janneke C Alers; Theodorus H van der Kwast; Kees J Vissers; Fritz H Schroder; Mark F Wildhagen; Phillip G Febbo; Arul M Chinnaiyan; Kenneth J Pienta; Peter R Carroll; Mark A Rubin; Colin Collins; Herman van Dekken
Journal:  Hum Mol Genet       Date:  2004-05-11       Impact factor: 6.150

10.  High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.

Authors:  D Pinkel; R Segraves; D Sudar; S Clark; I Poole; D Kowbel; C Collins; W L Kuo; C Chen; Y Zhai; S H Dairkee; B M Ljung; J W Gray; D G Albertson
Journal:  Nat Genet       Date:  1998-10       Impact factor: 38.330

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  14 in total

1.  Single-cell genetic analysis reveals insights into clonal development of prostate cancers and indicates loss of PTEN as a marker of poor prognosis.

Authors:  Kerstin M Heselmeyer-Haddad; Lissa Y Berroa Garcia; Amanda Bradley; Leanora Hernandez; Yue Hu; Jens K Habermann; Christoph Dumke; Christoph Thorns; Sven Perner; Ekaterina Pestova; Catherine Burke; Salim A Chowdhury; Russell Schwartz; Alejandro A Schäffer; Pamela L Paris; Thomas Ried
Journal:  Am J Pathol       Date:  2014-08-14       Impact factor: 4.307

Review 2.  An arranged marriage for precision medicine: hypoxia and genomic assays in localized prostate cancer radiotherapy.

Authors:  R G Bristow; A Berlin; A Dal Pra
Journal:  Br J Radiol       Date:  2014-02-03       Impact factor: 3.039

3.  Performance of the Genomic Evaluators of Metastatic Prostate Cancer (GEMCaP) tumor biomarker for identifying recurrent disease in African American patients.

Authors:  Albert M Levin; Karla J Lindquist; Andrew Avila; John S Witte; Pamela L Paris; Benjamin A Rybicki
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2014-06-02       Impact factor: 4.254

Review 4.  The diverse heterogeneity of molecular alterations in prostate cancer identified through next-generation sequencing.

Authors:  Alexander W Wyatt; Fan Mo; Yuzhuo Wang; Colin C Collins
Journal:  Asian J Androl       Date:  2013-03-18       Impact factor: 3.285

5.  Associations between circulating carotenoids, genomic instability and the risk of high-grade prostate cancer.

Authors:  Tobias Nordström; Erin L Van Blarigan; Vy Ngo; Ritu Roy; Vivian Weinberg; Xiaoling Song; Jeffry Simko; Peter R Carroll; June M Chan; Pamela L Paris
Journal:  Prostate       Date:  2015-11-20       Impact factor: 4.104

6.  Chromoplexy: a new paradigm in genome remodeling and evolution.

Authors:  Kendric Wang; Yuzhuo Wang; Colin C Collins
Journal:  Asian J Androl       Date:  2013-08-26       Impact factor: 3.285

7.  Improving prediction of prostate cancer recurrence using chemical imaging.

Authors:  Jin Tae Kwak; André Kajdacsy-Balla; Virgilia Macias; Michael Walsh; Saurabh Sinha; Rohit Bhargava
Journal:  Sci Rep       Date:  2015-03-04       Impact factor: 4.379

8.  Development and external validation of a prognostic nomogram for gastric cancer using the national cancer registry.

Authors:  Jianjun Liu; Qirong Geng; Zhimin Liu; Shangxiang Chen; Jing Guo; Pengfei Kong; YingBo Chen; Wei Li; Zhiwei Zhou; Xiaowei Sun; Youqing Zhan; Dazhi Xu
Journal:  Oncotarget       Date:  2016-06-14

Review 9.  DNA alterations in the tumor genome and their associations with clinical outcome in prostate cancer.

Authors:  Wennuan Liu
Journal:  Asian J Androl       Date:  2016 Jul-Aug       Impact factor: 3.285

10.  Nomogram based on systemic inflammatory response markers predicting the survival of patients with resectable gastric cancer after D2 gastrectomy.

Authors:  Jianjun Liu; Qirong Geng; Shangxiang Chen; Xuechao Liu; Pengfei Kong; Zhiwei Zhou; Youqing Zhan; Dazhi Xu
Journal:  Oncotarget       Date:  2016-06-21
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