Literature DB >> 23503423

The diverse heterogeneity of molecular alterations in prostate cancer identified through next-generation sequencing.

Alexander W Wyatt1, Fan Mo, Yuzhuo Wang, Colin C Collins.   

Abstract

Prostate cancer is a leading cause of global cancer-related death but attempts to improve diagnoses and develop novel therapies have been confounded by significant patient heterogeneity. In recent years, the application of next-generation sequencing to hundreds of prostate tumours has defined novel molecular subtypes and characterized extensive genomic aberration underlying disease initiation and progression. It is now clear that the heterogeneity observed in the clinic is underpinned by a molecular landscape rife with complexity, where genomic rearrangements and rare mutations combine to amplify transcriptomic diversity. This review dissects our current understanding of prostate cancer 'omics', including the sentinel role of copy number variation, the growing spectrum of oncogenic fusion genes, the potential influence of chromothripsis, and breakthroughs in defining mutation-associated subtypes. Increasing evidence suggests that genomic lesions frequently converge on specific cellular functions and signalling pathways, yet recurrent gene aberration appears rare. Therefore, it is critical that we continue to define individual tumour genomes, especially in the context of their expressed transcriptome. Only through improved characterisation of tumour to tumour variability can we advance to an age of precision therapy and personalized oncology.

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Year:  2013        PMID: 23503423      PMCID: PMC3739651          DOI: 10.1038/aja.2013.13

Source DB:  PubMed          Journal:  Asian J Androl        ISSN: 1008-682X            Impact factor:   3.285


  82 in total

1.  Prognostic value of an RNA expression signature derived from cell cycle proliferation genes in patients with prostate cancer: a retrospective study.

Authors:  Jack Cuzick; Gregory P Swanson; Gabrielle Fisher; Arthur R Brothman; Daniel M Berney; Julia E Reid; David Mesher; V O Speights; Elzbieta Stankiewicz; Christopher S Foster; Henrik Møller; Peter Scardino; Jorja D Warren; Jimmy Park; Adib Younus; Darl D Flake; Susanne Wagner; Alexander Gutin; Jerry S Lanchbury; Steven Stone
Journal:  Lancet Oncol       Date:  2011-03       Impact factor: 41.316

2.  Identification of the miR-106b~25 microRNA cluster as a proto-oncogenic PTEN-targeting intron that cooperates with its host gene MCM7 in transformation.

Authors:  Laura Poliseno; Leonardo Salmena; Luisa Riccardi; Alessandro Fornari; Min Sup Song; Robin M Hobbs; Paolo Sportoletti; Shorheh Varmeh; Ainara Egia; Giuseppe Fedele; Lucia Rameh; Massimo Loda; Pier Paolo Pandolfi
Journal:  Sci Signal       Date:  2010-04-13       Impact factor: 8.192

3.  A phase I pharmacokinetic and pharmacodynamic study of OGX-011, a 2'-methoxyethyl antisense oligonucleotide to clusterin, in patients with localized prostate cancer.

Authors:  Kim N Chi; Elizabeth Eisenhauer; Ladan Fazli; Edward C Jones; S Larry Goldenberg; Jean Powers; Dongsheng Tu; Martin E Gleave
Journal:  J Natl Cancer Inst       Date:  2005-09-07       Impact factor: 13.506

4.  Studies on prostatic cancer. I. The effect of castration, of estrogen and androgen injection on serum phosphatases in metastatic carcinoma of the prostate.

Authors:  C Huggins; C V Hodges
Journal:  CA Cancer J Clin       Date:  1972 Jul-Aug       Impact factor: 508.702

5.  Chromothripsis identifies a rare and aggressive entity among newly diagnosed multiple myeloma patients.

Authors:  Florence Magrangeas; Hervé Avet-Loiseau; Nikhil C Munshi; Stéphane Minvielle
Journal:  Blood       Date:  2011-05-31       Impact factor: 22.113

Review 6.  Molecular genetics of prostate cancer: new prospects for old challenges.

Authors:  Michael M Shen; Cory Abate-Shen
Journal:  Genes Dev       Date:  2010-09-15       Impact factor: 11.361

7.  Genomic profiling reveals alternative genetic pathways of prostate tumorigenesis.

Authors:  Jacques Lapointe; Chunde Li; Craig P Giacomini; Keyan Salari; Stephanie Huang; Pei Wang; Michelle Ferrari; Tina Hernandez-Boussard; James D Brooks; Jonathan R Pollack
Journal:  Cancer Res       Date:  2007-09-15       Impact factor: 12.701

8.  Androgen receptor splice variants mediate enzalutamide resistance in castration-resistant prostate cancer cell lines.

Authors:  Yingming Li; Siu Chiu Chan; Lucas J Brand; Tae Hyun Hwang; Kevin A T Silverstein; Scott M Dehm
Journal:  Cancer Res       Date:  2012-11-01       Impact factor: 12.701

9.  The genomic complexity of primary human prostate cancer.

Authors:  Michael F Berger; Michael S Lawrence; Francesca Demichelis; Yotam Drier; Kristian Cibulskis; Andrey Y Sivachenko; Andrea Sboner; Raquel Esgueva; Dorothee Pflueger; Carrie Sougnez; Robert Onofrio; Scott L Carter; Kyung Park; Lukas Habegger; Lauren Ambrogio; Timothy Fennell; Melissa Parkin; Gordon Saksena; Douglas Voet; Alex H Ramos; Trevor J Pugh; Jane Wilkinson; Sheila Fisher; Wendy Winckler; Scott Mahan; Kristin Ardlie; Jennifer Baldwin; Jonathan W Simons; Naoki Kitabayashi; Theresa Y MacDonald; Philip W Kantoff; Lynda Chin; Stacey B Gabriel; Mark B Gerstein; Todd R Golub; Matthew Meyerson; Ashutosh Tewari; Eric S Lander; Gad Getz; Mark A Rubin; Levi A Garraway
Journal:  Nature       Date:  2011-02-10       Impact factor: 49.962

10.  Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression.

Authors:  John R Prensner; Matthew K Iyer; O Alejandro Balbin; Saravana M Dhanasekaran; Qi Cao; J Chad Brenner; Bharathi Laxman; Irfan A Asangani; Catherine S Grasso; Hal D Kominsky; Xuhong Cao; Xiaojun Jing; Xiaoju Wang; Javed Siddiqui; John T Wei; Daniel Robinson; Hari K Iyer; Nallasivam Palanisamy; Christopher A Maher; Arul M Chinnaiyan
Journal:  Nat Biotechnol       Date:  2011-07-31       Impact factor: 54.908

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  21 in total

1.  Global advances in prostate cancer diagnosis and therapy.

Authors:  Guneet Walia; Yinghao Sun; Howard R Soule
Journal:  Asian J Androl       Date:  2013-04-22       Impact factor: 3.285

Review 2.  Mechanisms of Therapeutic Resistance in Prostate Cancer.

Authors:  Mary Nakazawa; Channing Paller; Natasha Kyprianou
Journal:  Curr Oncol Rep       Date:  2017-02       Impact factor: 5.075

3.  Changpingibacter yushuensis gen. nov., sp. nov., isolated from fluvial sediment in Qinghai Tibet Plateau of China.

Authors:  Yifan Jiao; Sihui Zhang; Jing Yang; Xin-He Lai; Kui Dong; Yanpeng Cheng; Mingchao Xu; Wentao Zhu; Shan Lu; Dong Jin; Ji Pu; Ying Huang; Liyun Liu; Suping Wang; Jianguo Xu
Journal:  J Microbiol       Date:  2022-01-07       Impact factor: 3.422

Review 4.  Metabolomic Biomarkers of Prostate Cancer: Prediction, Diagnosis, Progression, Prognosis, and Recurrence.

Authors:  Rachel S Kelly; Matthew G Vander Heiden; Edward Giovannucci; Lorelei A Mucci
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2016-04-06       Impact factor: 4.254

5.  Chromoplexy: a new paradigm in genome remodeling and evolution.

Authors:  Kendric Wang; Yuzhuo Wang; Colin C Collins
Journal:  Asian J Androl       Date:  2013-08-26       Impact factor: 3.285

6.  Evaluation of hGM-CSF/hTNFα surface-modified prostate cancer therapeutic vaccine in the huPBL-SCID chimeric mouse model.

Authors:  Shouhua Lai; Zhiyong Huang; Yunting Guo; Yunqin Cui; Lei Wang; Weifeng Ren; Furong Ying; Hui Gao; Lingxia He; Tieli Zhou; Jiegen Jiang; Jimin Gao
Journal:  J Hematol Oncol       Date:  2015-06-25       Impact factor: 17.388

7.  Heterogeneity in the inter-tumor transcriptome of high risk prostate cancer.

Authors:  Alexander W Wyatt; Fan Mo; Kendric Wang; Brian McConeghy; Sonal Brahmbhatt; Lina Jong; Devon M Mitchell; Rebecca L Johnston; Anne Haegert; Estelle Li; Janet Liew; Jake Yeung; Raunak Shrestha; Anna V Lapuk; Andrew McPherson; Robert Shukin; Robert H Bell; Shawn Anderson; Jennifer Bishop; Antonio Hurtado-Coll; Hong Xiao; Arul M Chinnaiyan; Rohit Mehra; Dong Lin; Yuzhuo Wang; Ladan Fazli; Martin E Gleave; Stanislav V Volik; Colin C Collins
Journal:  Genome Biol       Date:  2014-08-26       Impact factor: 13.583

Review 8.  Clinical variability and molecular heterogeneity in prostate cancer.

Authors:  Jonathan Shoag; Christopher E Barbieri
Journal:  Asian J Androl       Date:  2016 Jul-Aug       Impact factor: 3.285

Review 9.  Mast cells as a potential prognostic marker in prostate cancer.

Authors:  Gianluigi Taverna; Guido Giusti; Mauro Seveso; Rodolfo Hurle; Piergiuseppe Colombo; Sanja Stifter; Fabio Grizzi
Journal:  Dis Markers       Date:  2013-11-11       Impact factor: 3.434

10.  Association of vitamin D receptor variants with clinical parameters in prostate cancer.

Authors:  Sarah Braga Rodrigues Nunes; Fabrícia de Matos Oliveira; Adriana Freitas Neves; Galber Rodrigues Araujo; Karina Marangoni; Luiz Ricardo Goulart; Thaise Gonçalves Araújo
Journal:  Springerplus       Date:  2016-03-24
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