Literature DB >> 20024091

Epigenome manipulation as a pathway to new natural product scaffolds and their congeners.

Robert H Cichewicz1.   

Abstract

The covalent modification of chromatin is an important control mechanism used by fungi to modulate the transcription of genes involved in secondary metabolite production. To date, both molecular-based and chemical approaches targeting histone and DNA posttranslational processes have shown great potential for rationally directing the activation and/or suppression of natural-product-encoding gene clusters. In this Highlight, the organization of the fungal epigenome is summarized and strategies for manipulating chromatin-related targets are presented. Applications of these techniques are illustrated using several recently published accounts in which chemical-epigenetic methods and mutant studies were successfully employed for the de novo or enhanced production of structurally diverse fungal natural products (e.g., anthraquinones, cladochromes, lunalides, mycotoxins, and nygerones).

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Year:  2009        PMID: 20024091      PMCID: PMC2958777          DOI: 10.1039/b920860g

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   13.423


  164 in total

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Journal:  Biol Res       Date:  2001       Impact factor: 5.612

2.  The opposed effect of 5-azacytidine and light on the development of reproductive structures in Neurospora crassa.

Authors:  Mikhail S Kritsky; Vincenzo E A Russo; Svetlana Yu Filippovich; Tatiana P Afanasieva; Galina P Bachurina
Journal:  Photochem Photobiol       Date:  2002-01       Impact factor: 3.421

3.  Azacitidine.

Authors:  Jean-Pierre J Issa; Hagop M Kantarjian; Peter Kirkpatrick
Journal:  Nat Rev Drug Discov       Date:  2005-04       Impact factor: 84.694

Review 4.  Epigenetic regulation of chromatin structure and gene function by biotin.

Authors:  Yousef I Hassan; Janos Zempleni
Journal:  J Nutr       Date:  2006-07       Impact factor: 4.798

5.  JmjC-domain-containing proteins and histone demethylation.

Authors:  Robert J Klose; Eric M Kallin; Yi Zhang
Journal:  Nat Rev Genet       Date:  2006-09       Impact factor: 53.242

6.  Histone H3-K56 acetylation is catalyzed by histone chaperone-dependent complexes.

Authors:  Toshiaki Tsubota; Christopher E Berndsen; Judith A Erkmann; Corey L Smith; Lanhao Yang; Michael A Freitas; John M Denu; Paul D Kaufman
Journal:  Mol Cell       Date:  2007-02-22       Impact factor: 17.970

7.  Genomic mining for Aspergillus natural products.

Authors:  Jin Woo Bok; Dirk Hoffmeister; Lori A Maggio-Hall; Renato Murillo; Jeremy D Glasner; Nancy P Keller
Journal:  Chem Biol       Date:  2006-01

8.  Differential esterase expression in developmental mutants of Aspergillus nidulans.

Authors:  M F Machado; M A de Castro-Prado
Journal:  Biochem Genet       Date:  2001-12       Impact factor: 1.890

9.  Accurate prediction of the Aspergillus nidulans terrequinone gene cluster boundaries using the transcriptional regulator LaeA.

Authors:  Sarah Bouhired; Monika Weber; Anita Kempf-Sontag; Nancy P Keller; Dirk Hoffmeister
Journal:  Fungal Genet Biol       Date:  2007-01-08       Impact factor: 3.495

10.  Histone methyltransferases in Aspergillus nidulans: evidence for a novel enzyme with a unique substrate specificity.

Authors:  Patrick Trojer; Markus Dangl; Ingo Bauer; Stefan Graessle; Peter Loidl; Gerald Brosch
Journal:  Biochemistry       Date:  2004-08-24       Impact factor: 3.162

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  78 in total

1.  Chemical epigenetics alters the secondary metabolite composition of guttate excreted by an atlantic-forest-soil-derived Penicillium citreonigrum.

Authors:  Xiaoru Wang; José G Sena Filho; Ashley R Hoover; Jarrod B King; Trevor K Ellis; Douglas R Powell; Robert H Cichewicz
Journal:  J Nat Prod       Date:  2010-05-28       Impact factor: 4.050

2.  Waikialoid A suppresses hyphal morphogenesis and inhibits biofilm development in pathogenic Candida albicans.

Authors:  Xiaoru Wang; Jianlan You; Jarrod B King; Douglas R Powell; Robert H Cichewicz
Journal:  J Nat Prod       Date:  2012-03-08       Impact factor: 4.050

3.  Gene clusters for secondary metabolic pathways: an emerging theme in plant biology.

Authors:  Anne Osbourn
Journal:  Plant Physiol       Date:  2010-10       Impact factor: 8.340

4.  Reactivation of antibiosis in the entomogenous fungus Chrysoporthe sp. SNB-CN74.

Authors:  Charlotte Nirma; Véronique Eparvier; Didier Stien
Journal:  J Antibiot (Tokyo)       Date:  2015-04-15       Impact factor: 2.649

Review 5.  Strategies for mining fungal natural products.

Authors:  Philipp Wiemann; Nancy P Keller
Journal:  J Ind Microbiol Biotechnol       Date:  2013-10-22       Impact factor: 3.346

Review 6.  Fungal secondary metabolism: regulation, function and drug discovery.

Authors:  Nancy P Keller
Journal:  Nat Rev Microbiol       Date:  2019-03       Impact factor: 60.633

Review 7.  Insights into microbial cryptic gene activation and strain improvement: principle, application and technical aspects.

Authors:  Kozo Ochi
Journal:  J Antibiot (Tokyo)       Date:  2016-07-06       Impact factor: 2.649

8.  Molecular epigenetic approach activates silent gene cluster producing dimeric bis-spiro-azaphilones in Chaetomium globosum CBS148.51.

Authors:  Meng-Hua Wang; Tao Jiang; Gang Ding; Shu-Bin Niu; Xue-Wei Wang; Meng Yu; Yu-Cheng Gu; Qiu-Bo Zhang; Jia-Huan Chen; Hong-Mei Jia; Zhong-Mei Zou
Journal:  J Antibiot (Tokyo)       Date:  2017-03-01       Impact factor: 2.649

9.  Bioconversion of 6-epi-Notoamide T Produces Metabolites of Unprecedented Structures in a Marine-derived Aspergillus sp.

Authors:  Hikaru Kato; Takashi Nakahara; Michitaka Yamaguchi; Ippei Kagiyama; Jennifer M Finefield; James D Sunderhaus; David H Sherman; Robert M Williams; Sachiko Tsukamoto
Journal:  Tetrahedron Lett       Date:  2015-01-01       Impact factor: 2.415

10.  Two histone deacetylases, FfHda1 and FfHda2, are important for Fusarium fujikuroi secondary metabolism and virulence.

Authors:  L Studt; F J Schmidt; L Jahn; C M K Sieber; L R Connolly; E-M Niehaus; M Freitag; H-U Humpf; B Tudzynski
Journal:  Appl Environ Microbiol       Date:  2013-10-04       Impact factor: 4.792

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