Literature DB >> 20018593

Metabolic networks: how to identify key components in the regulation of metabolism and growth.

Mark Stitt1, Ronan Sulpice, Joost Keurentjes.   

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Year:  2009        PMID： 20018593      PMCID： PMC2815907          DOI： 10.1104/pp.109.150821

Source DB:  PubMed          Journal:  Plant Physiol        ISSN： 0032-0889            Impact factor:   8.340


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  136 in total

1.  Network component analysis: reconstruction of regulatory signals in biological systems.

Authors:  James C Liao; Riccardo Boscolo; Young-Lyeol Yang; Linh My Tran; Chiara Sabatti; Vwani P Roychowdhury
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-12       Impact factor: 11.205

Review 2.  Arabidopsis and primary photosynthetic metabolism - more than the icing on the cake.

Authors:  Mark Stitt; John Lunn; Björn Usadel
Journal:  Plant J       Date:  2010-03       Impact factor: 6.417

3.  Dynamics of root growth stimulation in Nicotiana tabacum in increasing light intensity.

Authors:  Kerstin A Nagel; Ulrich Schurr; Achim Walter
Journal:  Plant Cell Environ       Date:  2006-10       Impact factor: 7.228

4.  Accurate assessment of amino acid mass isotopomer distributions for metabolic flux analysis.

Authors:  Maciek R Antoniewicz; Joanne K Kelleher; Gregory Stephanopoulos
Journal:  Anal Chem       Date:  2007-09-07       Impact factor: 6.986

5.  Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics.

Authors:  Masami Yokota Hirai; Marion Klein; Yuuta Fujikawa; Mitsuru Yano; Dayan B Goodenowe; Yasuyo Yamazaki; Shigehiko Kanaya; Yukiko Nakamura; Masahiko Kitayama; Hideyuki Suzuki; Nozomu Sakurai; Daisuke Shibata; Jim Tokuhisa; Michael Reichelt; Jonathan Gershenzon; Jutta Papenbrock; Kazuki Saito
Journal:  J Biol Chem       Date:  2005-05-02       Impact factor: 5.157

6.  The 1001 genomes project for Arabidopsis thaliana.

Authors:  Detlef Weigel; Richard Mott
Journal:  Genome Biol       Date:  2009-05-27       Impact factor: 13.583

7.  Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism.

Authors:  Eva Grafahrend-Belau; Falk Schreiber; Dirk Koschützki; Björn H Junker
Journal:  Plant Physiol       Date:  2008-11-05       Impact factor: 8.340

8.  Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins.

Authors:  Sang-Youl Park; Pauline Fung; Noriyuki Nishimura; Davin R Jensen; Hiroaki Fujii; Yang Zhao; Shelley Lumba; Julia Santiago; Americo Rodrigues; Tsz-Fung F Chow; Simon E Alfred; Dario Bonetta; Ruth Finkelstein; Nicholas J Provart; Darrell Desveaux; Pedro L Rodriguez; Peter McCourt; Jian-Kang Zhu; Julian I Schroeder; Brian F Volkman; Sean R Cutler
Journal:  Science       Date:  2009-04-30       Impact factor: 47.728

9.  Understanding the evolution of defense metabolites in Arabidopsis thaliana using genome-wide association mapping.

Authors:  Eva K F Chan; Heather C Rowe; Daniel J Kliebenstein
Journal:  Genetics       Date:  2009-09-07       Impact factor: 4.562

10.  Metabolite annotations based on the integration of mass spectral information.

Authors:  Yoko Iijima; Yukiko Nakamura; Yoshiyuki Ogata; Ken'ichi Tanaka; Nozomu Sakurai; Kunihiro Suda; Tatsuya Suzuki; Hideyuki Suzuki; Koei Okazaki; Masahiko Kitayama; Shigehiko Kanaya; Koh Aoki; Daisuke Shibata
Journal:  Plant J       Date:  2008-02-07       Impact factor: 6.417
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  51 in total

Review 1.  Cell biology of cnidarian-dinoflagellate symbiosis.

Authors:  Simon K Davy; Denis Allemand; Virginia M Weis
Journal:  Microbiol Mol Biol Rev       Date:  2012-06       Impact factor: 11.056

2.  Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions.

Authors:  Ronan Sulpice; Sandra Trenkamp; Matthias Steinfath; Bjorn Usadel; Yves Gibon; Hanna Witucka-Wall; Eva-Theresa Pyl; Hendrik Tschoep; Marie Caroline Steinhauser; Manuela Guenther; Melanie Hoehne; Johann M Rohwer; Thomas Altmann; Alisdair R Fernie; Mark Stitt
Journal:  Plant Cell       Date:  2010-08-10       Impact factor: 11.277

3.  The metabolic network of Synechocystis sp. PCC 6803: systemic properties of autotrophic growth.

Authors:  Henning Knoop; Yvonne Zilliges; Wolfgang Lockau; Ralf Steuer
Journal:  Plant Physiol       Date:  2010-07-08       Impact factor: 8.340

4.  Enhancing C3 photosynthesis.

Authors:  Susanne von Caemmerer; John R Evans
Journal:  Plant Physiol       Date:  2010-10       Impact factor: 8.340

5.  Exploring tomato gene functions based on coexpression modules using graph clustering and differential coexpression approaches.

Authors:  Atsushi Fukushima; Tomoko Nishizawa; Mariko Hayakumo; Shoko Hikosaka; Kazuki Saito; Eiji Goto; Miyako Kusano
Journal:  Plant Physiol       Date:  2012-02-03       Impact factor: 8.340

6.  Integrative Approaches to Enhance Understanding of Plant Metabolic Pathway Structure and Regulation.

Authors:  Takayuki Tohge; Federico Scossa; Alisdair R Fernie
Journal:  Plant Physiol       Date:  2015-09-14       Impact factor: 8.340

Review 7.  Novel links in the plant TOR kinase signaling network.

Authors:  Yan Xiong; Jen Sheen
Journal:  Curr Opin Plant Biol       Date:  2015-10-24       Impact factor: 7.834

8.  Enzyme activity profiles during fruit development in tomato cultivars and Solanum pennellii.

Authors:  Marie-Caroline Steinhauser; Dirk Steinhauser; Karin Koehl; Fernando Carrari; Yves Gibon; Alisdair R Fernie; Mark Stitt
Journal:  Plant Physiol       Date:  2010-03-24       Impact factor: 8.340

9.  Ozone exposure response for U.S. soybean cultivars: linear reductions in photosynthetic potential, biomass, and yield.

Authors:  Amy M Betzelberger; Craig R Yendrek; Jindong Sun; Courtney P Leisner; Randall L Nelson; Donald R Ort; Elizabeth A Ainsworth
Journal:  Plant Physiol       Date:  2012-10-04       Impact factor: 8.340

10.  Expression of Sucrose Transporter cDNAs Specifically in Companion Cells Enhances Phloem Loading and Long-Distance Transport of Sucrose but Leads to an Inhibition of Growth and the Perception of a Phosphate Limitation.

Authors:  Kasturi Dasgupta; Aswad S Khadilkar; Ronan Sulpice; Bikram Pant; Wolf-Rüdiger Scheible; Joachim Fisahn; Mark Stitt; Brian G Ayre
Journal:  Plant Physiol       Date:  2014-04-28       Impact factor: 8.340
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