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Literature DB >> 19519932

The 1001 genomes project for Arabidopsis thaliana.

Abstract

We advocate here a 1001 Genomes project for Arabidopsis thaliana, the workhorse of plant genetics, which will provide an enormous boost for plant research with a modest financial investment.

Entities: Gene Species

Mesh：

Year: 2009 PMID： 19519932 PMCID： PMC2718507 DOI： 10.1186/gb-2009-10-5-107

Source DB: PubMed Journal: Genome Biol ISSN： 1474-7596 Impact factor: 13.583

37 in total

1. Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time.

Authors: U Johanson; J West; C Lister; S Michaels; R Amasino; C Dean
Journal: Science Date: 2000-10-13 Impact factor: 47.728

2. Genetic structure of human populations.

Authors: Noah A Rosenberg; Jonathan K Pritchard; James L Weber; Howard M Cann; Kenneth K Kidd; Lev A Zhivotovsky; Marcus W Feldman
Journal: Science Date: 2002-12-20 Impact factor: 47.728

3. A haplotype map of the human genome.

Authors:
Journal: Nature Date: 2005-10-27 Impact factor: 49.962

4. Genome-wide genetic association of complex traits in heterogeneous stock mice.

Authors: William Valdar; Leah C Solberg; Dominique Gauguier; Stephanie Burnett; Paul Klenerman; William O Cookson; Martin S Taylor; J Nicholas P Rawlins; Richard Mott; Jonathan Flint
Journal: Nat Genet Date: 2006-07-09 Impact factor: 38.330

Review 5. Move on up, it's time for change--mobile signals controlling photoperiod-dependent flowering.

Authors: Yasushi Kobayashi; Detlef Weigel
Journal: Genes Dev Date: 2007-10-01 Impact factor: 11.361

Review 6. A fortunate choice: the history of Arabidopsis as a model plant.

Authors: Chris Somerville; Maarten Koornneef
Journal: Nat Rev Genet Date: 2002-11 Impact factor: 53.242

7. Native range genetic variation in Arabidopsis thaliana is strongly geographically structured and reflects Pleistocene glacial dynamics.

Authors: James B Beck; Heike Schmuths; Barbara A Schaal
Journal: Mol Ecol Date: 2007-12-20 Impact factor: 6.185

8. A second generation human haplotype map of over 3.1 million SNPs.

Authors: Kelly A Frazer; Dennis G Ballinger; David R Cox; David A Hinds; Laura L Stuve; Richard A Gibbs; John W Belmont; Andrew Boudreau; Paul Hardenbol; Suzanne M Leal; Shiran Pasternak; David A Wheeler; Thomas D Willis; Fuli Yu; Huanming Yang; Changqing Zeng; Yang Gao; Haoran Hu; Weitao Hu; Chaohua Li; Wei Lin; Siqi Liu; Hao Pan; Xiaoli Tang; Jian Wang; Wei Wang; Jun Yu; Bo Zhang; Qingrun Zhang; Hongbin Zhao; Hui Zhao; Jun Zhou; Stacey B Gabriel; Rachel Barry; Brendan Blumenstiel; Amy Camargo; Matthew Defelice; Maura Faggart; Mary Goyette; Supriya Gupta; Jamie Moore; Huy Nguyen; Robert C Onofrio; Melissa Parkin; Jessica Roy; Erich Stahl; Ellen Winchester; Liuda Ziaugra; David Altshuler; Yan Shen; Zhijian Yao; Wei Huang; Xun Chu; Yungang He; Li Jin; Yangfan Liu; Yayun Shen; Weiwei Sun; Haifeng Wang; Yi Wang; Ying Wang; Xiaoyan Xiong; Liang Xu; Mary M Y Waye; Stephen K W Tsui; Hong Xue; J Tze-Fei Wong; Luana M Galver; Jian-Bing Fan; Kevin Gunderson; Sarah S Murray; Arnold R Oliphant; Mark S Chee; Alexandre Montpetit; Fanny Chagnon; Vincent Ferretti; Martin Leboeuf; Jean-François Olivier; Michael S Phillips; Stéphanie Roumy; Clémentine Sallée; Andrei Verner; Thomas J Hudson; Pui-Yan Kwok; Dongmei Cai; Daniel C Koboldt; Raymond D Miller; Ludmila Pawlikowska; Patricia Taillon-Miller; Ming Xiao; Lap-Chee Tsui; William Mak; You Qiang Song; Paul K H Tam; Yusuke Nakamura; Takahisa Kawaguchi; Takuya Kitamoto; Takashi Morizono; Atsushi Nagashima; Yozo Ohnishi; Akihiro Sekine; Toshihiro Tanaka; Tatsuhiko Tsunoda; Panos Deloukas; Christine P Bird; Marcos Delgado; Emmanouil T Dermitzakis; Rhian Gwilliam; Sarah Hunt; Jonathan Morrison; Don Powell; Barbara E Stranger; Pamela Whittaker; David R Bentley; Mark J Daly; Paul I W de Bakker; Jeff Barrett; Yves R Chretien; Julian Maller; Steve McCarroll; Nick Patterson; Itsik Pe'er; Alkes Price; Shaun Purcell; Daniel J Richter; Pardis Sabeti; Richa Saxena; Stephen F Schaffner; Pak C Sham; Patrick Varilly; David Altshuler; Lincoln D Stein; Lalitha Krishnan; Albert Vernon Smith; Marcela K Tello-Ruiz; Gudmundur A Thorisson; Aravinda Chakravarti; Peter E Chen; David J Cutler; Carl S Kashuk; Shin Lin; Gonçalo R Abecasis; Weihua Guan; Yun Li; Heather M Munro; Zhaohui Steve Qin; Daryl J Thomas; Gilean McVean; Adam Auton; Leonardo Bottolo; Niall Cardin; Susana Eyheramendy; Colin Freeman; Jonathan Marchini; Simon Myers; Chris Spencer; Matthew Stephens; Peter Donnelly; Lon R Cardon; Geraldine Clarke; David M Evans; Andrew P Morris; Bruce S Weir; Tatsuhiko Tsunoda; James C Mullikin; Stephen T Sherry; Michael Feolo; Andrew Skol; Houcan Zhang; Changqing Zeng; Hui Zhao; Ichiro Matsuda; Yoshimitsu Fukushima; Darryl R Macer; Eiko Suda; Charles N Rotimi; Clement A Adebamowo; Ike Ajayi; Toyin Aniagwu; Patricia A Marshall; Chibuzor Nkwodimmah; Charmaine D M Royal; Mark F Leppert; Missy Dixon; Andy Peiffer; Renzong Qiu; Alastair Kent; Kazuto Kato; Norio Niikawa; Isaac F Adewole; Bartha M Knoppers; Morris W Foster; Ellen Wright Clayton; Jessica Watkin; Richard A Gibbs; John W Belmont; Donna Muzny; Lynne Nazareth; Erica Sodergren; George M Weinstock; David A Wheeler; Imtaz Yakub; Stacey B Gabriel; Robert C Onofrio; Daniel J Richter; Liuda Ziaugra; Bruce W Birren; Mark J Daly; David Altshuler; Richard K Wilson; Lucinda L Fulton; Jane Rogers; John Burton; Nigel P Carter; Christopher M Clee; Mark Griffiths; Matthew C Jones; Kirsten McLay; Robert W Plumb; Mark T Ross; Sarah K Sims; David L Willey; Zhu Chen; Hua Han; Le Kang; Martin Godbout; John C Wallenburg; Paul L'Archevêque; Guy Bellemare; Koji Saeki; Hongguang Wang; Daochang An; Hongbo Fu; Qing Li; Zhen Wang; Renwu Wang; Arthur L Holden; Lisa D Brooks; Jean E McEwen; Mark S Guyer; Vivian Ota Wang; Jane L Peterson; Michael Shi; Jack Spiegel; Lawrence M Sung; Lynn F Zacharia; Francis S Collins; Karen Kennedy; Ruth Jamieson; John Stewart
Journal: Nature Date: 2007-10-18 Impact factor: 49.962

9. Variation in molybdenum content across broadly distributed populations of Arabidopsis thaliana is controlled by a mitochondrial molybdenum transporter (MOT1).

Authors: Ivan Baxter; Balasubramaniam Muthukumar; Hyeong Cheol Park; Peter Buchner; Brett Lahner; John Danku; Keyan Zhao; Joohyun Lee; Malcolm J Hawkesford; Mary Lou Guerinot; David E Salt
Journal: PLoS Genet Date: 2008-02-29 Impact factor: 5.917

10. Demographic history of european populations of Arabidopsis thaliana.

Authors: Olivier François; Michael G B Blum; Mattias Jakobsson; Noah A Rosenberg
Journal: PLoS Genet Date: 2008-05-16 Impact factor: 5.917

179 in total

1. A database and API for variation, dense genotyping and resequencing data.

Authors: Daniel Rios; William M McLaren; Yuan Chen; Ewan Birney; Arne Stabenau; Paul Flicek; Fiona Cunningham
Journal: BMC Bioinformatics Date: 2010-05-11 Impact factor: 3.169

2. The recombination landscape in Arabidopsis thaliana F2 populations.

Authors: P A Salomé; K Bomblies; J Fitz; R A E Laitinen; N Warthmann; L Yant; D Weigel
Journal: Heredity (Edinb) Date: 2011-11-09 Impact factor: 3.821

Review 3. Natural variation in Arabidopsis: from molecular genetics to ecological genomics.

Authors: Detlef Weigel
Journal: Plant Physiol Date: 2011-12-06 Impact factor: 8.340

4. Taking the next step: building an Arabidopsis information portal.

Authors:
Journal: Plant Cell Date: 2012-06-29 Impact factor: 11.277

5. Genome-wide association studies of 14 agronomic traits in rice landraces.

Authors: Xuehui Huang; Xinghua Wei; Tao Sang; Qiang Zhao; Qi Feng; Yan Zhao; Canyang Li; Chuanrang Zhu; Tingting Lu; Zhiwu Zhang; Meng Li; Danlin Fan; Yunli Guo; Ahong Wang; Lu Wang; Liuwei Deng; Wenjun Li; Yiqi Lu; Qijun Weng; Kunyan Liu; Tao Huang; Taoying Zhou; Yufeng Jing; Wei Li; Zhang Lin; Edward S Buckler; Qian Qian; Qi-Fa Zhang; Jiayang Li; Bin Han
Journal: Nat Genet Date: 2010-10-24 Impact factor: 38.330

10. A positive feedback loop between HEAT SHOCK PROTEIN101 and HEAT STRESS-ASSOCIATED 32-KD PROTEIN modulates long-term acquired thermotolerance illustrating diverse heat stress responses in rice varieties.

Authors: Meng-yi Lin; Kuo-hsing Chai; Swee-suak Ko; Lin-yun Kuang; Huu-sheng Lur; Yee-yung Charng
Journal: Plant Physiol Date: 2014-02-11 Impact factor: 8.340