Literature DB >> 19966796

ATP-dependent human RISC assembly pathways.

Mayuko Yoda1, Tomoko Kawamata, Zain Paroo, Xuecheng Ye, Shintaro Iwasaki, Qinghua Liu, Yukihide Tomari.   

Abstract

The assembly of RNA-induced silencing complex (RISC) is a key process in small RNA-mediated gene silencing. In humans, small interfering RNAs (siRNAs) and microRNAs (miRNAs) are incorporated into RISCs containing the Argonaute (AGO) subfamily proteins Ago1-4. Previous studies have proposed that, unlike Drosophila melanogaster RISC assembly pathways, human RISC assembly is coupled with dicing and is independent of ATP. Here we show by careful reexamination that, in humans, RISC assembly and dicing are uncoupled, and ATP greatly facilitates RISC loading of small-RNA duplexes. Moreover, all four human AGO proteins show remarkably similar structural preferences for small-RNA duplexes: central mismatches promote RISC loading, and seed or 3'-mid (guide position 12-15) mismatches facilitate unwinding. All these features of human AGO proteins are highly reminiscent of fly Ago1 but not fly Ago2.

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Year:  2009        PMID: 19966796      PMCID: PMC2915567          DOI: 10.1038/nsmb.1733

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  45 in total

1.  ATP requirements and small interfering RNA structure in the RNA interference pathway.

Authors:  A Nykänen; B Haley; P D Zamore
Journal:  Cell       Date:  2001-11-02       Impact factor: 41.582

2.  Functional siRNAs and miRNAs exhibit strand bias.

Authors:  Anastasia Khvorova; Angela Reynolds; Sumedha D Jayasena
Journal:  Cell       Date:  2003-10-17       Impact factor: 41.582

3.  Characterization of endogenous human Argonautes and their miRNA partners in RNA silencing.

Authors:  Asuka Azuma-Mukai; Hideo Oguri; Toutai Mituyama; Zhi Rong Qian; Kiyoshi Asai; Haruhiko Siomi; Mikiko C Siomi
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-04       Impact factor: 11.205

Review 4.  On the road to reading the RNA-interference code.

Authors:  Haruhiko Siomi; Mikiko C Siomi
Journal:  Nature       Date:  2009-01-22       Impact factor: 49.962

5.  Essential and overlapping functions for mammalian Argonautes in microRNA silencing.

Authors:  Hong Su; Melanie I Trombly; Jian Chen; Xiaozhong Wang
Journal:  Genes Dev       Date:  2009-01-27       Impact factor: 11.361

Review 6.  Origins and Mechanisms of miRNAs and siRNAs.

Authors:  Richard W Carthew; Erik J Sontheimer
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

7.  A Dicer-2-dependent 80s complex cleaves targeted mRNAs during RNAi in Drosophila.

Authors:  John W Pham; Janice L Pellino; Young Sik Lee; Richard W Carthew; Erik J Sontheimer
Journal:  Cell       Date:  2004-04-02       Impact factor: 41.582

8.  Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs.

Authors:  Markus Landthaler; Dimos Gaidatzis; Andrea Rothballer; Po Yu Chen; Steven Joseph Soll; Lana Dinic; Tolulope Ojo; Markus Hafner; Mihaela Zavolan; Thomas Tuschl
Journal:  RNA       Date:  2008-10-31       Impact factor: 4.942

9.  RISC assembly defects in the Drosophila RNAi mutant armitage.

Authors:  Yukihide Tomari; Tingting Du; Benjamin Haley; Dianne S Schwarz; Ryan Bennett; Heather A Cook; Birgit S Koppetsch; William E Theurkauf; Phillip D Zamore
Journal:  Cell       Date:  2004-03-19       Impact factor: 41.582

Review 10.  Small silencing RNAs: an expanding universe.

Authors:  Megha Ghildiyal; Phillip D Zamore
Journal:  Nat Rev Genet       Date:  2009-02       Impact factor: 53.242

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  146 in total

1.  The N domain of Argonaute drives duplex unwinding during RISC assembly.

Authors:  Pieter Bas Kwak; Yukihide Tomari
Journal:  Nat Struct Mol Biol       Date:  2012-01-10       Impact factor: 15.369

2.  Dicer is dispensable for asymmetric RISC loading in mammals.

Authors:  Juan G Betancur; Yukihide Tomari
Journal:  RNA       Date:  2011-11-21       Impact factor: 4.942

3.  Precursor microRNA-programmed silencing complex assembly pathways in mammals.

Authors:  Xuhang Liu; Dong-Yan Jin; Michael T McManus; Zissimos Mourelatos
Journal:  Mol Cell       Date:  2012-04-12       Impact factor: 17.970

4.  Quantitative evaluation of siRNA delivery in vivo.

Authors:  Yi Pei; Paula J Hancock; Hangchun Zhang; René Bartz; Craig Cherrin; Nathalie Innocent; Colin J Pomerantz; Jessica Seitzer; Martin L Koser; Marc T Abrams; Yan Xu; Nelly A Kuklin; Paul A Burke; Alan B Sachs; Laura Sepp-Lorenzino; Stanley F Barnett
Journal:  RNA       Date:  2010-10-12       Impact factor: 4.942

Review 5.  Designing highly active siRNAs for therapeutic applications.

Authors:  S Patrick Walton; Ming Wu; Joseph A Gredell; Christina Chan
Journal:  FEBS J       Date:  2010-12       Impact factor: 5.542

6.  Terminal Duplex Stability and Nucleotide Identity Differentially Control siRNA Loading and Activity in RNA Interference.

Authors:  Phillip A Angart; Rebecca J Carlson; Kwasi Adu-Berchie; S Patrick Walton
Journal:  Nucleic Acid Ther       Date:  2016-07-11       Impact factor: 5.486

7.  Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin.

Authors:  Alexander Maxwell Burroughs; Yoshinari Ando; Michiel Jan Laurens de Hoon; Yasuhiro Tomaru; Harukazu Suzuki; Yoshihide Hayashizaki; Carsten Olivier Daub
Journal:  RNA Biol       Date:  2011-01-01       Impact factor: 4.652

Review 8.  New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing.

Authors:  Alexander Maxwell Burroughs; Yoshinari Ando; L Aravind
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-12-05       Impact factor: 9.957

9.  RNA interference may suppress stress granule formation by preventing argonaute 2 recruitment.

Authors:  Qiang Lou; Yanzhong Hu; Yanfang Ma; Zheng Dong
Journal:  Am J Physiol Cell Physiol       Date:  2018-11-07       Impact factor: 4.249

10.  Multiple sensors ensure guide strand selection in human RNAi pathways.

Authors:  Cameron L Noland; Jennifer A Doudna
Journal:  RNA       Date:  2013-03-26       Impact factor: 4.942

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