Literature DB >> 19964040

Classification in DTI using shapes of white matter tracts.

Nagesh Adluru1, Chris Hinrichs, Moo K Chung, Jee-Eun Lee, Vikas Singh, Erin D Bigler, Nicholas Lange, Janet E Lainhart, Andrew L Alexander.   

Abstract

Diffusion Tensor Imaging (DTI) provides unique information about the underlying tissue structure of brain white matter in vivo, including both the geometry of fiber bundles as well as quantitative information about tissue properties as characterized by measures such as tensor orientation, anisotropy, and size. Our objective in this paper is to evaluate the utility of shape representations of white matter tracts extracted from DTI data for classification of clinically different population groups (here autistic vs control). As a first step, our algorithm extracts fiber bundles passing through approximately marked regions of interest on affinely aligned brain volumes. The subsequent analysis is entirely based on the geometric modeling of the extracted tracts. A key advantage of using such an abstraction is that it allows us to capture invariant features of brains allowing for efficient large sample size studies. We demonstrate that with the use of an appropriate representation of the tract shapes, classifiers can be built with reasonable prediction accuracies without making heavy use of the spatial normalization machinery needed when using voxel based features.

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Mesh:

Year:  2009        PMID: 19964040      PMCID: PMC4437626          DOI: 10.1109/IEMBS.2009.5333386

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  10 in total

1.  COMPARE: classification of morphological patterns using adaptive regional elements.

Authors:  Yong Fan; Dinggang Shen; Ruben C Gur; Raquel E Gur; Christos Davatzikos
Journal:  IEEE Trans Med Imaging       Date:  2007-01       Impact factor: 10.048

2.  Shape-based normalization of the corpus callosum for DTI connectivity analysis.

Authors:  Hui Sun; Paul A Yushkevich; Hui Zhang; Philip A Cook; Jeffrey T Duda; Tony J Simon; James C Gee
Journal:  IEEE Trans Med Imaging       Date:  2007-09       Impact factor: 10.048

3.  Tract shape modelling provides evidence of topological change in corpus callosum genu during normal ageing.

Authors:  Mark E Bastin; Jakub P Piatkowski; Amos J Storkey; Laura J Brown; Alasdair M J Maclullich; Jonathan D Clayden
Journal:  Neuroimage       Date:  2008-07-18       Impact factor: 6.556

4.  Streamline flows for white matter fibre pathway segmentation in diffusion MRI.

Authors:  Peter Savadjiev; Jennifer S W Campbell; G Bruce Pike; Kaleem Siddiqi
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

5.  A random effects modelling approach to the crossing-fibre problem in tractography.

Authors:  Martin D King; David G Gadian; Chris A Clark
Journal:  Neuroimage       Date:  2008-10-22       Impact factor: 6.556

Review 6.  Machine learning classifiers and fMRI: a tutorial overview.

Authors:  Francisco Pereira; Tom Mitchell; Matthew Botvinick
Journal:  Neuroimage       Date:  2008-11-21       Impact factor: 6.556

7.  Group analysis of DTI fiber tract statistics with application to neurodevelopment.

Authors:  Casey B Goodlett; P Thomas Fletcher; John H Gilmore; Guido Gerig
Journal:  Neuroimage       Date:  2008-11-14       Impact factor: 6.556

8.  Cortical surface thickness as a classifier: boosting for autism classification.

Authors:  Vikas Singh; Lopamudra Mukherjee; Moo K Chung
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

9.  White matter tractography using diffusion tensor deflection.

Authors:  Mariana Lazar; David M Weinstein; Jay S Tsuruda; Khader M Hasan; Konstantinos Arfanakis; M Elizabeth Meyerand; Benham Badie; Howard A Rowley; Victor Haughton; Aaron Field; Andrew L Alexander
Journal:  Hum Brain Mapp       Date:  2003-04       Impact factor: 5.038

10.  Tract-based morphometry for white matter group analysis.

Authors:  Lauren J O'Donnell; Carl-Fredrik Westin; Alexandra J Golby
Journal:  Neuroimage       Date:  2008-12-25       Impact factor: 6.556

  10 in total
  9 in total

Review 1.  Diffusion tensor imaging in autism spectrum disorder: a review.

Authors:  Brittany G Travers; Nagesh Adluru; Chad Ennis; Do P M Tromp; Dan Destiche; Sam Doran; Erin D Bigler; Nicholas Lange; Janet E Lainhart; Andrew L Alexander
Journal:  Autism Res       Date:  2012-07-11       Impact factor: 5.216

2.  Atypical diffusion tensor hemispheric asymmetry in autism.

Authors:  Nicholas Lange; Molly B Dubray; Jee Eun Lee; Michael P Froimowitz; Alyson Froehlich; Nagesh Adluru; Brad Wright; Caitlin Ravichandran; P Thomas Fletcher; Erin D Bigler; Andrew L Alexander; Janet E Lainhart
Journal:  Autism Res       Date:  2010-12-02       Impact factor: 5.216

3.  Diffusion based abnormality markers of pathology: toward learned diagnostic prediction of ASD.

Authors:  Madhura Ingalhalikar; Drew Parker; Luke Bloy; Timothy P L Roberts; Ragini Verma
Journal:  Neuroimage       Date:  2011-05-14       Impact factor: 6.556

4.  Applications of Epsilon Radial Networks in Neuroimage Analyses.

Authors:  Nagesh Adluru; Moo K Chung; Nicholas T Lange; Janet E Lainhart; Andrew L Alexander
Journal:  Adv Image Video Technol       Date:  2011

5.  Along-tract statistics allow for enhanced tractography analysis.

Authors:  John B Colby; Lindsay Soderberg; Catherine Lebel; Ivo D Dinov; Paul M Thompson; Elizabeth R Sowell
Journal:  Neuroimage       Date:  2011-11-09       Impact factor: 6.556

6.  Penalized likelihood phenotyping: unifying voxelwise analyses and multi-voxel pattern analyses in neuroimaging: penalized likelihood phenotyping.

Authors:  Nagesh Adluru; Bret M Hanlon; Antoine Lutz; Janet E Lainhart; Andrew L Alexander; Richard J Davidson
Journal:  Neuroinformatics       Date:  2013-04

7.  Whole brain white matter connectivity analysis using machine learning: An application to autism.

Authors:  Fan Zhang; Peter Savadjiev; Weidong Cai; Yang Song; Yogesh Rathi; Birkan Tunç; Drew Parker; Tina Kapur; Robert T Schultz; Nikos Makris; Ragini Verma; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2017-10-25       Impact factor: 6.556

8.  Effects of DTI spatial normalization on white matter tract reconstructions.

Authors:  Nagesh Adluru; Hui Zhang; Do P M Tromp; Andrew L Alexander
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2013-03-13

Review 9.  Studying Autism Spectrum Disorder with Structural and Diffusion Magnetic Resonance Imaging: A Survey.

Authors:  Marwa M T Ismail; Robert S Keynton; Mahmoud M M O Mostapha; Ahmed H ElTanboly; Manuel F Casanova; Georgy L Gimel'farb; Ayman El-Baz
Journal:  Front Hum Neurosci       Date:  2016-05-11       Impact factor: 3.169

  9 in total

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