Literature DB >> 19960014

Adding calorimetric data to decision making in lead discovery: a hot tip.

John E Ladbury1, Gerhard Klebe, Ernesto Freire.   

Abstract

Recognition of the limitations of high-throughput screening approaches in the discovery of candidate drugs has reawakened interest in structure-based and other rational design methods. Here, we describe how isothermal titration calorimetry can be used to obtain thermodynamic data on the binding of compounds to protein targets. We propose that these data--particularly the change in enthalpy--could provide a valuable, complementary addition to established tools for selecting compounds in lead discovery and for aiding lead optimization.

Mesh:

Year:  2009        PMID: 19960014     DOI: 10.1038/nrd3054

Source DB:  PubMed          Journal:  Nat Rev Drug Discov        ISSN: 1474-1776            Impact factor:   84.694


  27 in total

1.  Structural parameterization of the binding enthalpy of small ligands.

Authors:  Irene Luque; Ernesto Freire
Journal:  Proteins       Date:  2002-11-01

2.  Ligand efficiency: a useful metric for lead selection.

Authors:  Andrew L Hopkins; Colin R Groom; Alexander Alex
Journal:  Drug Discov Today       Date:  2004-05-15       Impact factor: 7.851

3.  Overcoming roadblocks in lead optimization: a thermodynamic perspective.

Authors:  Adam J Ruben; Yoshiaki Kiso; Ernesto Freire
Journal:  Chem Biol Drug Des       Date:  2006-01       Impact factor: 2.817

4.  Identification of novel fragment compounds targeted against the pY pocket of v-Src SH2 by computational and NMR screening and thermodynamic evaluation.

Authors:  Jonathan D Taylor; Philip J Gilbert; Mark A Williams; William R Pitt; John E Ladbury
Journal:  Proteins       Date:  2007-06-01

5.  The enthalpy change in protein folding and binding: refinement of parameters for structure-based calculations.

Authors:  V J Hilser; J Gómez; E Freire
Journal:  Proteins       Date:  1996-10

6.  Evaluation of linked protonation effects in protein binding reactions using isothermal titration calorimetry.

Authors:  B M Baker; K P Murphy
Journal:  Biophys J       Date:  1996-10       Impact factor: 4.033

Review 7.  Sensing the heat: the application of isothermal titration calorimetry to thermodynamic studies of biomolecular interactions.

Authors:  J E Ladbury; B Z Chowdhry
Journal:  Chem Biol       Date:  1996-10

Review 8.  Counting the calories to stay in the groove.

Authors:  J E Ladbury
Journal:  Structure       Date:  1995-07-15       Impact factor: 5.006

9.  Coupling of local folding to site-specific binding of proteins to DNA.

Authors:  R S Spolar; M T Record
Journal:  Science       Date:  1994-02-11       Impact factor: 47.728

Review 10.  Do enthalpy and entropy distinguish first in class from best in class?

Authors:  Ernesto Freire
Journal:  Drug Discov Today       Date:  2008-08-26       Impact factor: 7.851

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  91 in total

Review 1.  Finding the sweet spot: the role of nature and nurture in medicinal chemistry.

Authors:  Michael M Hann; György M Keserü
Journal:  Nat Rev Drug Discov       Date:  2012-04-30       Impact factor: 84.694

Review 2.  Finding a better path to drug selectivity.

Authors:  Yuko Kawasaki; Ernesto Freire
Journal:  Drug Discov Today       Date:  2011-08-02       Impact factor: 7.851

Review 3.  Thermodynamics of protein-ligand interactions as a reference for computational analysis: how to assess accuracy, reliability and relevance of experimental data.

Authors:  Stefan G Krimmer; Gerhard Klebe
Journal:  J Comput Aided Mol Des       Date:  2015-09-16       Impact factor: 3.686

4.  Fragment-based and structure-guided discovery and optimization of Rho kinase inhibitors.

Authors:  Rongshi Li; Mathew P Martin; Yan Liu; Binglin Wang; Ronil A Patel; Jin-Yi Zhu; Nan Sun; Roberta Pireddu; Nicholas J Lawrence; Jiannong Li; Eric B Haura; Shen-Shu Sung; Wayne C Guida; Ernst Schonbrunn; Said M Sebti
Journal:  J Med Chem       Date:  2012-02-15       Impact factor: 7.446

5.  Protein-ligand interactions: thermodynamic effects associated with increasing nonpolar surface area.

Authors:  James M Myslinski; John E DeLorbe; John H Clements; Stephen F Martin
Journal:  J Am Chem Soc       Date:  2011-10-27       Impact factor: 15.419

6.  High-precision isothermal titration calorimetry with automated peak-shape analysis.

Authors:  Sandro Keller; Carolyn Vargas; Huaying Zhao; Grzegorz Piszczek; Chad A Brautigam; Peter Schuck
Journal:  Anal Chem       Date:  2012-05-14       Impact factor: 6.986

7.  A three-stage biophysical screening cascade for fragment-based drug discovery.

Authors:  Ellene H Mashalidis; Paweł Śledź; Steffen Lang; Chris Abell
Journal:  Nat Protoc       Date:  2013-10-24       Impact factor: 13.491

8.  Protein-ligand interactions: probing the energetics of a putative cation-π interaction.

Authors:  James M Myslinski; John H Clements; Stephen F Martin
Journal:  Bioorg Med Chem Lett       Date:  2014-05-09       Impact factor: 2.823

9.  A continuous flow microfluidic calorimeter: 3-D numerical modeling with aqueous reactants.

Authors:  Mehmet A Sen; Gregory J Kowalski; Jason Fiering; Dale Larson
Journal:  Thermochim Acta       Date:  2015-03-10       Impact factor: 3.115

10.  Enthalpy screen of drug candidates.

Authors:  Arne Schön; Ernesto Freire
Journal:  Anal Biochem       Date:  2016-08-25       Impact factor: 3.365

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