Literature DB >> 22530732

High-precision isothermal titration calorimetry with automated peak-shape analysis.

Sandro Keller1, Carolyn Vargas, Huaying Zhao, Grzegorz Piszczek, Chad A Brautigam, Peter Schuck.   

Abstract

Isothermal titration calorimetry (ITC) is a powerful classical method that enables researchers in many fields to study the thermodynamics of molecular interactions. Primary ITC data comprise the temporal evolution of differential power reporting the heat of reaction during a series of injections of aliquots of a reactant into a sample cell. By integration of each injection peak, an isotherm can be constructed of total changes in enthalpy as a function of changes in solution composition, which is rich in thermodynamic information on the reaction. However, the signals from the injection peaks are superimposed by the stochastically varying time-course of the instrumental baseline power, limiting the precision of ITC isotherms. Here, we describe a method for automated peak assignment based on peak-shape analysis via singular value decomposition in combination with detailed least-squares modeling of local pre- and postinjection baselines. This approach can effectively filter out contributions of short-term noise and adventitious events in the power trace. This method also provides, for the first time, statistical error estimates for the individual isotherm data points. In turn, this results in improved detection limits for high-affinity or low-enthalpy binding reactions and significantly higher precision of the derived thermodynamic parameters.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22530732      PMCID: PMC3389189          DOI: 10.1021/ac3007522

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  35 in total

1.  On the value of c: can low affinity systems be studied by isothermal titration calorimetry?

Authors:  W Bruce Turnbull; Antonio H Daranas
Journal:  J Am Chem Soc       Date:  2003-12-03       Impact factor: 15.419

2.  Open-ITC: an alternate computational approach to analyze the isothermal titration calorimetry data of complex binding mechanisms.

Authors:  Janarthanan Krishnamoorthy; Smita Mohanty
Journal:  J Mol Recognit       Date:  2011 Nov-Dec       Impact factor: 2.137

3.  Structural and thermodynamic characterization of the TYK2 and JAK3 kinase domains in complex with CP-690550 and CMP-6.

Authors:  Jill E Chrencik; Akshay Patny; Iris K Leung; Brian Korniski; Thomas L Emmons; Troii Hall; Robin A Weinberg; Jennifer A Gormley; Jennifer M Williams; Jacqueline E Day; Jeffrey L Hirsch; James R Kiefer; Joseph W Leone; H David Fischer; Cynthia D Sommers; Horng-Chih Huang; E J Jacobsen; Ruth E Tenbrink; Alfredo G Tomasselli; Timothy E Benson
Journal:  J Mol Biol       Date:  2010-05-15       Impact factor: 5.469

4.  Studying multisite binary and ternary protein interactions by global analysis of isothermal titration calorimetry data in SEDPHAT: application to adaptor protein complexes in cell signaling.

Authors:  Jon C D Houtman; Patrick H Brown; Brent Bowden; Hiroshi Yamaguchi; Ettore Appella; Lawrence E Samelson; Peter Schuck
Journal:  Protein Sci       Date:  2007-01       Impact factor: 6.725

Review 5.  Adding calorimetric data to decision making in lead discovery: a hot tip.

Authors:  John E Ladbury; Gerhard Klebe; Ernesto Freire
Journal:  Nat Rev Drug Discov       Date:  2009-12-04       Impact factor: 84.694

6.  Revisiting the optimal c value for isothermal titration calorimetry.

Authors:  Jana Broecker; Carolyn Vargas; Sandro Keller
Journal:  Anal Biochem       Date:  2011-07-30       Impact factor: 3.365

7.  Evaluation of linked protonation effects in protein binding reactions using isothermal titration calorimetry.

Authors:  B M Baker; K P Murphy
Journal:  Biophys J       Date:  1996-10       Impact factor: 4.033

Review 8.  Antioxidant actions of flavonoids: thermodynamic and kinetic analysis.

Authors:  Mónica Galleano; Sandra V Verstraeten; Patricia I Oteiza; Cesar G Fraga
Journal:  Arch Biochem Biophys       Date:  2010-04-11       Impact factor: 4.013

9.  Rapid measurement of binding constants and heats of binding using a new titration calorimeter.

Authors:  T Wiseman; S Williston; J F Brandts; L N Lin
Journal:  Anal Biochem       Date:  1989-05-15       Impact factor: 3.365

10.  A general-purpose baseline estimation algorithm for spectroscopic data.

Authors:  Donald A Barkauskas; David M Rocke
Journal:  Anal Chim Acta       Date:  2010-01-11       Impact factor: 6.558

View more
  179 in total

1.  Ligand binding to a high-energy partially unfolded protein.

Authors:  Joseph R Kasper; Chiwook Park
Journal:  Protein Sci       Date:  2014-12-05       Impact factor: 6.725

Review 2.  Thermodynamics of protein-ligand interactions as a reference for computational analysis: how to assess accuracy, reliability and relevance of experimental data.

Authors:  Stefan G Krimmer; Gerhard Klebe
Journal:  J Comput Aided Mol Des       Date:  2015-09-16       Impact factor: 3.686

3.  The Structure of the Cyprinid herpesvirus 3 ORF112-Zα·Z-DNA Complex Reveals a Mechanism of Nucleic Acids Recognition Conserved with E3L, a Poxvirus Inhibitor of Interferon Response.

Authors:  Krzysztof Kuś; Krzysztof Rakus; Maxime Boutier; Theokliti Tsigkri; Luisa Gabriel; Alain Vanderplasschen; Alekos Athanasiadis
Journal:  J Biol Chem       Date:  2015-11-11       Impact factor: 5.157

4.  Multipoint binding of the SLP-76 SH2 domain to ADAP is critical for oligomerization of SLP-76 signaling complexes in stimulated T cells.

Authors:  Nathan P Coussens; Ryo Hayashi; Patrick H Brown; Lakshmi Balagopalan; Andrea Balbo; Itoro Akpan; Jon C D Houtman; Valarie A Barr; Peter Schuck; Ettore Appella; Lawrence E Samelson
Journal:  Mol Cell Biol       Date:  2013-08-26       Impact factor: 4.272

5.  A Wolbachia nuclease and its binding partner provide a distinct mechanism for cytoplasmic incompatibility.

Authors:  Hongli Chen; Judith A Ronau; John F Beckmann; Mark Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-15       Impact factor: 11.205

6.  Lipid Scrambling Induced by Membrane-Active Substances.

Authors:  Lisa Dietel; Louma Kalie; Heiko Heerklotz
Journal:  Biophys J       Date:  2020-07-14       Impact factor: 4.033

7.  Structure of dihydromethanopterin reductase, a cubic protein cage for redox transfer.

Authors:  Dan E McNamara; Duilio Cascio; Julien Jorda; Cheene Bustos; Tzu-Chi Wang; Madeline E Rasche; Todd O Yeates; Thomas A Bobik
Journal:  J Biol Chem       Date:  2014-02-12       Impact factor: 5.157

8.  Structure and ligand-binding mechanism of the human OX1 and OX2 orexin receptors.

Authors:  Jie Yin; Kerim Babaoglu; Chad A Brautigam; Lindsay Clark; Zhenhua Shao; Thomas H Scheuermann; Charles M Harrell; Anthony L Gotter; Anthony J Roecker; Christopher J Winrow; John J Renger; Paul J Coleman; Daniel M Rosenbaum
Journal:  Nat Struct Mol Biol       Date:  2016-03-07       Impact factor: 15.369

9.  Fitting two- and three-site binding models to isothermal titration calorimetric data.

Authors:  Chad A Brautigam
Journal:  Methods       Date:  2014-12-05       Impact factor: 3.608

10.  Development of an Efficient Enzyme Production and Structure-Based Discovery Platform for BACE1 Inhibitors.

Authors:  Yu-Chen Yen; Annalissa M Kammeyer; Katherine C Jensen; Jagannadharao Tirlangi; Arun K Ghosh; Andrew D Mesecar
Journal:  Biochemistry       Date:  2019-10-22       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.