Literature DB >> 19952074

Quantitative cell array screening to identify regulators of gene expression.

Pinay Kainth1, Brenda Andrews.   

Abstract

In the last decade or so, advances in genome-scale technologies have allowed systematic and detailed analysis of gene function. The experimental accessibility of budding yeast makes it a test-bed for technology development and application of new functional genomic tools and resources that pave the way for comparable efforts in higher eukaryotes. In this article, we review advances in reporter screening technology to discover trans-acting regulators of promoters (or cis-elements) of interest in the context of a novel functional genomics approach called Reporter Synthetic Genetic Array (R-SGA) analysis. We anticipate that this methodology will enable researchers to collect quantitative data on hundreds of gene expression pathways in an effort to better understand transcriptional regulatory networks.

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Year:  2009        PMID: 19952074      PMCID: PMC3097099          DOI: 10.1093/bfgp/elp047

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  59 in total

1.  Genome-wide RNAi analysis of growth and viability in Drosophila cells.

Authors:  Michael Boutros; Amy A Kiger; Susan Armknecht; Kim Kerr; Marc Hild; Britta Koch; Stefan A Haas; Renato Paro; Norbert Perrimon
Journal:  Science       Date:  2004-02-06       Impact factor: 47.728

Review 2.  Functional genomics and proteomics: charting a multidimensional map of the yeast cell.

Authors:  Gary D Bader; Adrian Heilbut; Brenda Andrews; Mike Tyers; Timothy Hughes; Charles Boone
Journal:  Trends Cell Biol       Date:  2003-07       Impact factor: 20.808

3.  Exploration of essential gene functions via titratable promoter alleles.

Authors:  Sanie Mnaimneh; Armaity P Davierwala; Jennifer Haynes; Jason Moffat; Wen-Tao Peng; Wen Zhang; Xueqi Yang; Jeff Pootoolal; Gordon Chua; Andres Lopez; Miles Trochesset; Darcy Morse; Nevan J Krogan; Shawna L Hiley; Zhijian Li; Quaid Morris; Jörg Grigull; Nicholas Mitsakakis; Christopher J Roberts; Jack F Greenblatt; Charles Boone; Chris A Kaiser; Brenda J Andrews; Timothy R Hughes
Journal:  Cell       Date:  2004-07-09       Impact factor: 41.582

4.  Molecular analysis of a cell lineage.

Authors:  K Nasmyth
Journal:  Nature       Date:  1983-04-21       Impact factor: 49.962

5.  Regulation of yeast mating-type interconversion: feedback control of HO gene expression by the mating-type locus.

Authors:  R Jensen; G F Sprague; I Herskowitz
Journal:  Proc Natl Acad Sci U S A       Date:  1983-05       Impact factor: 11.205

6.  Beta-galactosidase gene fusions for analyzing gene expression in escherichia coli and yeast.

Authors:  M J Casadaban; A Martinez-Arias; S K Shapira; J Chou
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

7.  Cell-cycle regulation of yeast histone mRNA.

Authors:  L M Hereford; M A Osley; T R Ludwig; C S McLaughlin
Journal:  Cell       Date:  1981-05       Impact factor: 41.582

8.  Transcriptional regulatory code of a eukaryotic genome.

Authors:  Christopher T Harbison; D Benjamin Gordon; Tong Ihn Lee; Nicola J Rinaldi; Kenzie D Macisaac; Timothy W Danford; Nancy M Hannett; Jean-Bosco Tagne; David B Reynolds; Jane Yoo; Ezra G Jennings; Julia Zeitlinger; Dmitry K Pokholok; Manolis Kellis; P Alex Rolfe; Ken T Takusagawa; Eric S Lander; David K Gifford; Ernest Fraenkel; Richard A Young
Journal:  Nature       Date:  2004-09-02       Impact factor: 49.962

9.  Systematic functional analysis of the Caenorhabditis elegans genome using RNAi.

Authors:  Ravi S Kamath; Andrew G Fraser; Yan Dong; Gino Poulin; Richard Durbin; Monica Gotta; Alexander Kanapin; Nathalie Le Bot; Sergio Moreno; Marc Sohrmann; David P Welchman; Peder Zipperlen; Julie Ahringer
Journal:  Nature       Date:  2003-01-16       Impact factor: 49.962

10.  CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast.

Authors:  Michael Costanzo; Joy L Nishikawa; Xiaojing Tang; Jonathan S Millman; Oliver Schub; Kevin Breitkreuz; Danielle Dewar; Ivan Rupes; Brenda Andrews; Mike Tyers
Journal:  Cell       Date:  2004-06-25       Impact factor: 41.582

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  1 in total

1.  Illuminating transcription pathways using fluorescent reporter genes and yeast functional genomics.

Authors:  Pinay Kainth; Brenda Andrews
Journal:  Transcription       Date:  2010 Sep-Oct
  1 in total

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