Literature DB >> 19948806

Genome sequence of the cellulosome-producing mesophilic organism Clostridium cellulovorans 743B.

Yutaka Tamaru1, Hideo Miyake, Kouichi Kuroda, Akihito Nakanishi, Yujiro Kawade, Kousuke Yamamoto, Masaaki Uemura, Yasuhiro Fujita, Roy H Doi, Mitsuyoshi Ueda.   

Abstract

Clostridium cellulovorans 743B was isolated from a wood chip pile and is an anaerobic and mesophilic spore-forming bacterium. This organism degrades native substrates in soft biomass such as corn fiber and rice straw efficiently by producing an extracellular enzyme complex called the cellulosome. Here we report the genome sequence of C. cellulovorans 743B.

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Year:  2009        PMID： 19948806      PMCID： PMC2812471          DOI： 10.1128/JB.01450-09

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

1.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

2.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

3.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

Review 4.  From cellulosomes to cellulosomics.

Authors:  Edward A Bayer; Raphael Lamed; Bryan A White; Harry J Flint
Journal:  Chem Rec       Date:  2008       Impact factor: 6.771

5.  Isolation and Characterization of an Anaerobic, Cellulolytic Bacterium, Clostridium cellulovorans sp. nov.

Authors:  R Sleat; R A Mah; R Robinson
Journal:  Appl Environ Microbiol       Date:  1984-07       Impact factor: 4.792

6.  Comparison of staining techniques for scanning electron microscopic detection of ultrastructural protuberances on cellulolytic bacteria.

Authors:  B G Blair; K L Anderson
Journal:  Biotech Histochem       Date:  1998-03       Impact factor: 1.718

7.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

8.  CRITICA: coding region identification tool invoking comparative analysis.

Authors:  J H Badger; G J Olsen
Journal:  Mol Biol Evol       Date:  1999-04       Impact factor: 16.240

9.  Regulation of cellulose-inducible structures of Clostridium cellulovorans.

Authors:  B G Blair; K L Anderson
Journal:  Can J Microbiol       Date:  1999-03       Impact factor: 2.419
  9 in total
  20 in total

1.  Putative role of cellulosomal protease inhibitors in Clostridium cellulovorans based on gene expression and measurement of activities.

Authors:  Hirokazu Meguro; Hironobu Morisaka; Kouichi Kuroda; Hideo Miyake; Yutaka Tamaru; Mitsuyoshi Ueda
Journal:  J Bacteriol       Date:  2011-07-22       Impact factor: 3.490

2.  Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7.

Authors:  Garret Suen; David M Stevenson; David C Bruce; Olga Chertkov; Alex Copeland; Jan-Feng Cheng; Chris Detter; John C Detter; Lynne A Goodwin; Cliff S Han; Loren J Hauser; Natalia N Ivanova; Nikos C Kyrpides; Miriam L Land; Alla Lapidus; Susan Lucas; Galina Ovchinnikova; Sam Pitluck; Roxanne Tapia; Tanja Woyke; Julie Boyum; David Mead; Paul J Weimer
Journal:  J Bacteriol       Date:  2011-10       Impact factor: 3.490

3.  A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis.

Authors:  Evan M Glasgow; Elias I Kemna; Craig A Bingman; Nicole L Ing; Kai Deng; Christopher M Bianchetti; Taichi E Takasuka; Trent R Northen; Brian G Fox
Journal:  J Biol Chem       Date:  2020-10-16       Impact factor: 5.157

4.  Exoproteome profiles of Clostridium cellulovorans grown on various carbon sources.

Authors:  Kazuma Matsui; Jungu Bae; Kohei Esaka; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
Journal:  Appl Environ Microbiol       Date:  2013-08-16       Impact factor: 4.792

5.  Improved n-Butanol Production from Clostridium cellulovorans by Integrated Metabolic and Evolutionary Engineering.

Authors:  Zhiqiang Wen; Rodrigo Ledesma-Amaro; Jianping Lin; Yu Jiang; Sheng Yang
Journal:  Appl Environ Microbiol       Date:  2019-03-22       Impact factor: 4.792

6.  A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis.

Authors:  Evan M Glasgow; Elias I Kemna; Craig A Bingman; Nicole Ing; Kai Deng; Christopher M Bianchetti; Taichi E Takasuka; Trent R Northen; Brian G Fox
Journal:  J Biol Chem       Date:  2020-12-18       Impact factor: 5.157

7.  Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system.

Authors:  Bareket Dassa; Ilya Borovok; Raphael Lamed; Bernard Henrissat; Pedro Coutinho; Christopher L Hemme; Yue Huang; Jizhong Zhou; Edward A Bayer
Journal:  BMC Genomics       Date:  2012-05-30       Impact factor: 3.969

8.  Structure and regulation of the cellulose degradome in Clostridium cellulolyticum.

Authors:  Chenggang Xu; Ranran Huang; Lin Teng; Dongmei Wang; Christopher L Hemme; Ilya Borovok; Qiang He; Raphael Lamed; Edward A Bayer; Jizhong Zhou; Jian Xu
Journal:  Biotechnol Biofuels       Date:  2013-05-08       Impact factor: 6.040

9.  Elucidation of the recognition mechanisms for hemicellulose and pectin in Clostridium cellulovorans using intracellular quantitative proteome analysis.

Authors:  Shunsuke Aburaya; Kohei Esaka; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
Journal:  AMB Express       Date:  2015-05-23       Impact factor: 3.298

10.  Profile of native cellulosomal proteins of Clostridium cellulovorans adapted to various carbon sources.

Authors:  Hironobu Morisaka; Kazuma Matsui; Yohei Tatsukami; Kouichi Kuroda; Hideo Miyake; Yutaka Tamaru; Mitsuyoshi Ueda
Journal:  AMB Express       Date:  2012-07-29       Impact factor: 3.298
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