Literature DB >> 21914885

Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7.

Garret Suen1, David M Stevenson, David C Bruce, Olga Chertkov, Alex Copeland, Jan-Feng Cheng, Chris Detter, John C Detter, Lynne A Goodwin, Cliff S Han, Loren J Hauser, Natalia N Ivanova, Nikos C Kyrpides, Miriam L Land, Alla Lapidus, Susan Lucas, Galina Ovchinnikova, Sam Pitluck, Roxanne Tapia, Tanja Woyke, Julie Boyum, David Mead, Paul J Weimer.   

Abstract

Ruminococcus albus 7 is a highly cellulolytic ruminal bacterium that is a member of the phylum Firmicutes. Here, we describe the complete genome of this microbe. This genome will be useful for rumen microbiology and cellulosome biology and in biofuel production, as one of its major fermentation products is ethanol.

Entities:  

Mesh：

Year:  2011        PMID： 21914885      PMCID： PMC3187470          DOI： 10.1128/JB.05621-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  15 in total

1.  Microorganisms in the rumen of cattle fed a constant ration.

Authors:  R E HUNGATE
Journal:  Can J Microbiol       Date:  1957-03       Impact factor: 2.419

2.  Solexa Ltd.

Authors:  Simon Bennett
Journal:  Pharmacogenomics       Date:  2004-06       Impact factor: 2.533

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

4.  Cell surface enzyme attachment is mediated by family 37 carbohydrate-binding modules, unique to Ruminococcus albus.

Authors:  Anat Ezer; Erez Matalon; Sadanari Jindou; Ilya Borovok; Nof Atamna; Zhongtang Yu; Mark Morrison; Edward A Bayer; Raphael Lamed
Journal:  J Bacteriol       Date:  2008-10-17       Impact factor: 3.490

5.  Fermentation of Insoluble Cellulose by Continuous Cultures of Ruminococcus albus.

Authors:  S G Pavlostathis; T L Miller; M J Wolin
Journal:  Appl Environ Microbiol       Date:  1988-11       Impact factor: 4.792

6.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

7.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

8.  Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum.

Authors:  J Nölling; G Breton; M V Omelchenko; K S Makarova; Q Zeng; R Gibson; H M Lee; J Dubois; D Qiu; J Hitti; Y I Wolf; R L Tatusov; F Sabathe; L Doucette-Stamm; P Soucaille; M J Daly; G N Bennett; E V Koonin; D R Smith
Journal:  J Bacteriol       Date:  2001-08       Impact factor: 3.490

9.  Studies of the extracellular glycocalyx of the anaerobic cellulolytic bacterium Ruminococcus albus 7.

Authors:  Paul J Weimer; Neil P J Price; Otini Kroukamp; Lydia-Marie Joubert; Gideon M Wolfaardt; Willem H Van Zyl
Journal:  Appl Environ Microbiol       Date:  2006-10-06       Impact factor: 4.792

10.  Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1.

Authors:  Margret E Berg Miller; Dionysios A Antonopoulos; Marco T Rincon; Mark Band; Albert Bari; Tatsiana Akraiko; Alvaro Hernandez; Jyothi Thimmapuram; Bernard Henrissat; Pedro M Coutinho; Ilya Borovok; Sadanari Jindou; Raphael Lamed; Harry J Flint; Edward A Bayer; Bryan A White
Journal:  PLoS One       Date:  2009-08-14       Impact factor: 3.240
View more
  31 in total

1.  Hydrogen formation and its regulation in Ruminococcus albus: involvement of an electron-bifurcating [FeFe]-hydrogenase, of a non-electron-bifurcating [FeFe]-hydrogenase, and of a putative hydrogen-sensing [FeFe]-hydrogenase.

Authors:  Yanning Zheng; Jörg Kahnt; In Hyuk Kwon; Roderick I Mackie; Rudolf K Thauer
Journal:  J Bacteriol       Date:  2014-08-25       Impact factor: 3.490

2.  Regulatory Properties of the ADP-Glucose Pyrophosphorylase from the Clostridial Firmicutes Member Ruminococcus albus.

Authors:  Antonela E Cereijo; Matías D Asencion Diez; Miguel A Ballicora; Alberto A Iglesias
Journal:  J Bacteriol       Date:  2018-08-10       Impact factor: 3.490

Review 3.  The Ruminococci: key symbionts of the gut ecosystem.

Authors:  Alex J La Reau; Garret Suen
Journal:  J Microbiol       Date:  2018-02-28       Impact factor: 3.422

4.  Metatranscriptomic analyses of plant cell wall polysaccharide degradation by microorganisms in the cow rumen.

Authors:  Xin Dai; Yan Tian; Jinting Li; Yingfeng Luo; Di Liu; Huajun Zheng; Jiaqi Wang; Zhiyang Dong; Songnian Hu; Li Huang
Journal:  Appl Environ Microbiol       Date:  2015-02       Impact factor: 4.792

5.  Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation.

Authors:  Olov Svartström; Johannes Alneberg; Nicolas Terrapon; Vincent Lombard; Ino de Bruijn; Jonas Malmsten; Ann-Marie Dalin; Emilie El Muller; Pranjul Shah; Paul Wilmes; Bernard Henrissat; Henrik Aspeborg; Anders F Andersson
Journal:  ISME J       Date:  2017-07-21       Impact factor: 10.302

6.  A genomic signature and the identification of new sporulation genes.

Authors:  Ana B Abecasis; Mónica Serrano; Renato Alves; Leonor Quintais; José B Pereira-Leal; Adriano O Henriques
Journal:  J Bacteriol       Date:  2013-02-08       Impact factor: 3.490

7.  Identification of GH10 xylanases in strains 2 and Mz5 of Pseudobutyrivibrio xylanivorans.

Authors:  Diego J Grilli; Jan Kopečný; Jakub Mrázek; Romana Marinšek-Logar; Sebastián Paez Lama; Miguel Sosa Escudero; Graciela N Arenas
Journal:  Folia Microbiol (Praha)       Date:  2014-06-20       Impact factor: 2.099

8.  The role of milk sialyllactose in intestinal bacterial colonization.

Authors:  G Adrienne Weiss; Thierry Hennet
Journal:  Adv Nutr       Date:  2012-05-01       Impact factor: 8.701

9.  Dynamic variation of the microbial community structure during the long-time mono-fermentation of maize and sugar beet silage.

Authors:  Johanna Klang; Susanne Theuerl; Ulrich Szewzyk; Markus Huth; Rainer Tölle; Michael Klocke
Journal:  Microb Biotechnol       Date:  2015-02-25       Impact factor: 5.813

10.  Complete genome sequence of Oscillibacter valericigenes Sjm18-20(T) (=NBRC 101213(T)).

Authors:  Yoko Katano; Shun Fujinami; Akatsuki Kawakoshi; Hidekazu Nakazawa; Syoko Oji; Takao Iino; Akio Oguchi; Akiho Ankai; Shigehiro Fukui; Yasuyuki Terui; Sachi Kamata; Takeshi Harada; Satoshi Tanikawa; Ken-Ichiro Suzuki; Nobuyuki Fujita
Journal:  Stand Genomic Sci       Date:  2012-07-30
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.