Literature DB >> 19948731

Structures of discoidal high density lipoproteins: a combined computational-experimental approach.

Feifei Gu1, Martin K Jones, Jianguo Chen, James C Patterson, Andrea Catte, W Gray Jerome, Ling Li, Jere P Segrest.   

Abstract

Conversion of discoidal phospholipid (PL)-rich high density lipoprotein (HDL) to spheroidal cholesteryl ester-rich HDL is a central step in reverse cholesterol transport. A detailed understanding of this process and the atheroprotective role of apolipoprotein A-I (apoA-I) requires knowledge of the structure and dynamics of these various particles. This study, combining computation with experimentation, illuminates structural features of apoA-I allowing it to incorporate varying amounts of PL. Molecular dynamics simulated annealing of PL-rich HDL models containing unesterified cholesterol results in double belt structures with the same general saddle-shaped conformation of both our previous molecular dynamics simulations at 310 K and the x-ray structure of lipid-free apoA-I. Conversion from a discoidal to a saddle-shaped particle involves loss of helicity and formation of loops in opposing antiparallel parts of the double belt. During surface expansion caused by the temperature-jump step, the curved palmitoyloleoylphosphatidylcholine bilayer surfaces approach planarity. Relaxation back into saddle-shaped structures after cool down and equilibration further supports the saddle-shaped particle model. Our kinetic analyses of reconstituted particles demonstrate that PL-rich particles exist in discrete sizes corresponding to local energetic minima. Agreement of experimental and computational determinations of particle size/shape and apoA-I helicity provide additional support for the saddle-shaped particle model. Truncation experiments combined with simulations suggest that the N-terminal proline-rich domain of apoA-I influences the stability of PL-rich HDL particles. We propose that apoA-I incorporates increasing PL in the form of minimal surface bilayers through the incremental unwinding of an initially twisted saddle-shaped apoA-I double belt structure.

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Year:  2009        PMID: 19948731      PMCID: PMC2836071          DOI: 10.1074/jbc.M109.069914

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  46 in total

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Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

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Journal:  Pac Symp Biocomput       Date:  1997

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Authors:  J P Segrest; R L Jackson; J D Morrisett; A M Gotto
Journal:  FEBS Lett       Date:  1974-01-15       Impact factor: 4.124

4.  Cryo-electron microscopy of low density lipoprotein and reconstituted discoidal high density lipoprotein: imaging of the apolipoprotein moiety.

Authors:  R van Antwerpen; G C Chen; C R Pullinger; J P Kane; M LaBelle; R M Krauss; C Luna-Chavez; T M Forte; J C Gilkey
Journal:  J Lipid Res       Date:  1997-04       Impact factor: 5.922

5.  Effect of carboxyl-terminal truncation on structure and lipid interaction of human apolipoprotein E4.

Authors:  Masafumi Tanaka; Charulatha Vedhachalam; Takaaki Sakamoto; Padmaja Dhanasekaran; Michael C Phillips; Sissel Lund-Katz; Hiroyuki Saito
Journal:  Biochemistry       Date:  2006-04-04       Impact factor: 3.162

6.  Structural determination of lipid-bound ApoA-I using fluorescence resonance energy transfer.

Authors:  H Li; D S Lyles; M J Thomas; W Pan; M G Sorci-Thomas
Journal:  J Biol Chem       Date:  2000-11-24       Impact factor: 5.157

7.  Apolipoprotein A-I assumes a "looped belt" conformation on reconstituted high density lipoprotein.

Authors:  Dale D O Martin; Madhu S Budamagunta; Robert O Ryan; John C Voss; Michael N Oda
Journal:  J Biol Chem       Date:  2006-05-11       Impact factor: 5.157

8.  Intermolecular contact between globular N-terminal fold and C-terminal domain of ApoA-I stabilizes its lipid-bound conformation: studies employing chemical cross-linking and mass spectrometry.

Authors:  Shaila Bhat; Mary G Sorci-Thomas; Eric T Alexander; Michael P Samuel; Michael J Thomas
Journal:  J Biol Chem       Date:  2005-06-22       Impact factor: 5.157

9.  Properties of discoidal complexes of human apolipoprotein A-I with phosphatidylcholines containing various fatty acid chains.

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Journal:  Biochim Biophys Acta       Date:  1987-06-02

10.  Lipid-binding studies of human apolipoprotein A-I and its terminally truncated mutants.

Authors:  Yiling Fang; Olga Gursky; David Atkinson
Journal:  Biochemistry       Date:  2003-11-18       Impact factor: 3.162

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  45 in total

1.  Validation of previous computer models and MD simulations of discoidal HDL by a recent crystal structure of apoA-I.

Authors:  Jere P Segrest; Martin K Jones; Andrea Catte; Saravana P Thirumuruganandham
Journal:  J Lipid Res       Date:  2012-07-08       Impact factor: 5.922

2.  Rotational and hinge dynamics of discoidal high density lipoproteins probed by interchain disulfide bond formation.

Authors:  Ling Li; Songlin Li; Martin K Jones; Jere P Segrest
Journal:  Biochim Biophys Acta       Date:  2011-10-19

3.  Assessment of the validity of the double superhelix model for reconstituted high density lipoproteins: a combined computational-experimental approach.

Authors:  Martin K Jones; Lei Zhang; Andrea Catte; Ling Li; Michael N Oda; Gang Ren; Jere P Segrest
Journal:  J Biol Chem       Date:  2010-10-25       Impact factor: 5.157

4.  Structure of apolipoprotein A-I N terminus on nascent high density lipoproteins.

Authors:  Jens O Lagerstedt; Giorgio Cavigiolio; Madhu S Budamagunta; Ioanna Pagani; John C Voss; Michael N Oda
Journal:  J Biol Chem       Date:  2010-11-03       Impact factor: 5.157

5.  Detecting the functional complexities between high-density lipoprotein mimetics.

Authors:  Yoshitaka J Sei; Jungho Ahn; Taeyoung Kim; Eunjung Shin; Angel J Santiago-Lopez; Seung Soon Jang; Noo Li Jeon; Young C Jang; YongTae Kim
Journal:  Biomaterials       Date:  2018-04-06       Impact factor: 12.479

6.  "Sticky" and "promiscuous", the yin and yang of apolipoprotein A-I termini in discoidal high-density lipoproteins: a combined computational-experimental approach.

Authors:  Martin K Jones; Feifei Gu; Andrea Catte; Ling Li; Jere P Segrest
Journal:  Biochemistry       Date:  2011-03-04       Impact factor: 3.162

7.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

8.  Sequence-specific apolipoprotein A-I effects on lecithin:cholesterol acyltransferase activity.

Authors:  Alexander D Dergunov
Journal:  Mol Cell Biochem       Date:  2013-03-21       Impact factor: 3.396

9.  Exchange of apolipoprotein A-I between lipid-associated and lipid-free states: a potential target for oxidative generation of dysfunctional high density lipoproteins.

Authors:  Giorgio Cavigiolio; Ethan G Geier; Baohai Shao; Jay W Heinecke; Michael N Oda
Journal:  J Biol Chem       Date:  2010-04-12       Impact factor: 5.157

10.  Molecular dynamics simulations of lipid nanodiscs.

Authors:  Mohsen Pourmousa; Richard W Pastor
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-05-03       Impact factor: 3.747

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