Literature DB >> 21329368

"Sticky" and "promiscuous", the yin and yang of apolipoprotein A-I termini in discoidal high-density lipoproteins: a combined computational-experimental approach.

Martin K Jones1, Feifei Gu, Andrea Catte, Ling Li, Jere P Segrest.   

Abstract

Apolipoprotein (apo) A-I-containing lipoproteins in the form of high-density lipoproteins (HDL) are inversely correlated with atherosclerosis. Because HDL is a soft form of condensed matter easily deformable by thermal fluctuations, the molecular mechanisms for HDL remodeling are not well understood. A promising approach to understanding HDL structure and dynamics is molecular dynamics (MD). In the present study, two computational strategies, MD simulated annealing (MDSA) and MD temperature jump, were combined with experimental particle reconstitution to explore molecular mechanisms for phospholipid- (PL-) rich HDL particle remodeling. The N-terminal domains of full-length apoA-I were shown to be "sticky", acting as a molecular latch largely driven by salt bridges, until, at a critical threshold of particle size, the associated domains released to expose extensive hydrocarbon regions of the PL to solvent. The "sticky" N-termini also associate with other apoA-I domains, perhaps being involved in N-terminal loops suggested by other laboratories. Alternatively, the overlapping helix 10 C-terminal domains of apoA-I were observed to be extremely mobile or "promiscuous", transiently exposing limited hydrocarbon regions of PL. Based upon these models and reconstitution studies, we propose that separation of the N-terminal domains, as particles exceed a critical size, triggers fusion between particles or between particles and membranes, while the C-terminal domains of apoA-I drive the exchange of polar lipids down concentration gradients between particles. This hypothesis has significant biological relevance since lipid exchange and particle remodeling are critically important processes during metabolism of HDL particles at every step in the antiatherogenic process of reverse cholesterol transport.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21329368      PMCID: PMC3119339          DOI: 10.1021/bi101301g

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  59 in total

1.  Chromatographic methods for quantitation of apolipoprotein A-I.

Authors:  G M Anantharamaiah; D W Garber
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

2.  Length scales of lipid dynamics and molecular dynamics.

Authors:  S E Feller; R W Pastor
Journal:  Pac Symp Biocomput       Date:  1997

3.  Composition and lipid spatial distribution of HDL particles in subjects with low and high HDL-cholesterol.

Authors:  Laxman Yetukuri; Sanni Söderlund; Artturi Koivuniemi; Tuulikki Seppänen-Laakso; Perttu S Niemelä; Marja Hyvönen; Marja-Riitta Taskinen; Ilpo Vattulainen; Matti Jauhiainen; Matej Oresic
Journal:  J Lipid Res       Date:  2010-04-29       Impact factor: 5.922

4.  Structural determination of lipid-bound ApoA-I using fluorescence resonance energy transfer.

Authors:  H Li; D S Lyles; M J Thomas; W Pan; M G Sorci-Thomas
Journal:  J Biol Chem       Date:  2000-11-24       Impact factor: 5.157

5.  Apolipoprotein A-I assumes a "looped belt" conformation on reconstituted high density lipoprotein.

Authors:  Dale D O Martin; Madhu S Budamagunta; Robert O Ryan; John C Voss; Michael N Oda
Journal:  J Biol Chem       Date:  2006-05-11       Impact factor: 5.157

6.  Intermolecular contact between globular N-terminal fold and C-terminal domain of ApoA-I stabilizes its lipid-bound conformation: studies employing chemical cross-linking and mass spectrometry.

Authors:  Shaila Bhat; Mary G Sorci-Thomas; Eric T Alexander; Michael P Samuel; Michael J Thomas
Journal:  J Biol Chem       Date:  2005-06-22       Impact factor: 5.157

7.  Crystal structure of truncated human apolipoprotein A-I suggests a lipid-bound conformation.

Authors:  D W Borhani; D P Rogers; J A Engler; C G Brouillette
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

8.  Molecular and cellular physiology of apolipoprotein A-I lipidation by the ATP-binding cassette transporter A1 (ABCA1).

Authors:  Maxime Denis; Bassam Haidar; Michel Marcil; Michel Bouvier; Larbi Krimbou; Jacques Genest
Journal:  J Biol Chem       Date:  2003-12-04       Impact factor: 5.157

9.  Atomistic simulations of phosphatidylcholines and cholesteryl esters in high-density lipoprotein-sized lipid droplet and trilayer: clues to cholesteryl ester transport and storage.

Authors:  Artturi Koivuniemi; Mikko Heikelä; Petri T Kovanen; Ilpo Vattulainen; Marja T Hyvönen
Journal:  Biophys J       Date:  2009-05-20       Impact factor: 4.033

10.  The C-terminal domain of apolipoprotein A-I contains a lipid-sensitive conformational trigger.

Authors:  Michael N Oda; Trudy M Forte; Robert O Ryan; John C Voss
Journal:  Nat Struct Biol       Date:  2003-06
View more
  13 in total

1.  Validation of previous computer models and MD simulations of discoidal HDL by a recent crystal structure of apoA-I.

Authors:  Jere P Segrest; Martin K Jones; Andrea Catte; Saravana P Thirumuruganandham
Journal:  J Lipid Res       Date:  2012-07-08       Impact factor: 5.922

2.  A robust all-atom model for LCAT generated by homology modeling.

Authors:  Jere P Segrest; Martin K Jones; Andrea Catte; Saravana P Thirumuruganandham
Journal:  J Lipid Res       Date:  2015-01-14       Impact factor: 5.922

3.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

4.  MD simulations suggest important surface differences between reconstituted and circulating spherical HDL.

Authors:  Jere P Segrest; Martin K Jones; Andrea Catte
Journal:  J Lipid Res       Date:  2013-07-15       Impact factor: 5.922

5.  Surface Density-Induced Pleating of a Lipid Monolayer Drives Nascent High-Density Lipoprotein Assembly.

Authors:  Jere P Segrest; Martin K Jones; Andrea Catte; Medha Manchekar; Geeta Datta; Lei Zhang; Robin Zhang; Ling Li; James C Patterson; Mayakonda N Palgunachari; Jack F Oram; Gang Ren
Journal:  Structure       Date:  2015-06-18       Impact factor: 5.006

Review 6.  The crystal structure of the C-terminal truncated apolipoprotein A-I sheds new light on amyloid formation by the N-terminal fragment.

Authors:  Olga Gursky; Xiaohu Mei; David Atkinson
Journal:  Biochemistry       Date:  2011-12-29       Impact factor: 3.162

7.  Small-angle X-ray scattering of the cholesterol incorporation into human ApoA1-POPC discoidal particles.

Authors:  Søren Roi Midtgaard; Martin Cramer Pedersen; Lise Arleth
Journal:  Biophys J       Date:  2015-07-21       Impact factor: 4.033

8.  Molecular dynamics simulations of lipid nanodiscs.

Authors:  Mohsen Pourmousa; Richard W Pastor
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-05-03       Impact factor: 3.747

9.  Crystal structure of Δ(185-243)ApoA-I suggests a mechanistic framework for the protein adaptation to the changing lipid load in good cholesterol: from flatland to sphereland via double belt, belt buckle, double hairpin and trefoil/tetrafoil.

Authors:  Olga Gursky
Journal:  J Mol Biol       Date:  2012-10-04       Impact factor: 5.469

10.  α-Synuclein oligomers with broken helical conformation form lipoprotein nanoparticles.

Authors:  Jobin Varkey; Naoko Mizuno; Balachandra G Hegde; Naiqian Cheng; Alasdair C Steven; Ralf Langen
Journal:  J Biol Chem       Date:  2013-04-22       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.