Literature DB >> 19938866

The role of nonbonded interactions in the conformational dynamics of organophosphorous hydrolase adsorbed onto functionalized mesoporous silica surfaces.

Diego E B Gomes1, Roberto D Lins, Pedro G Pascutti, Chenghong Lei, Thereza A Soares.   

Abstract

The enzyme organophosphorous hydrolase (OPH) catalyzes the hydrolysis of a wide variety of organophosphorous compounds with high catalytic efficiency and broad substrate specificity. The immobilization of OPH in functionalized mesoporous silica (FMS) surfaces increases significantly its catalytic specific activity, as compared to the enzyme in solution, with important applications for the detection and decontamination of insecticides and chemical warfare agents. Experimental measurements of immobilization efficiency as a function of the charge and coverage percentage of different functional groups have been interpreted as electrostatic forces being the predominant interactions underlying the adsorption of OPH onto FMS surfaces. Explicit solvent molecular dynamics simulations have been performed for OPH in bulk solution and adsorbed onto two distinct interaction potential models of the FMS functional groups to investigate the relative contributions of nonbonded interactions to the conformational dynamics and adsorption of the protein. Our results support the conclusion that electrostatic interactions are responsible for the binding of OPH to the FMS surface. However, these results also show that van der Waals forces are detrimental for interfacial adhesion. In addition, it is found that OPH adsorption onto the FMS models favors a protein conformation whose active site is fully accessible to the substrate, in contrast to the unconfined protein.

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Year:  2010        PMID: 19938866      PMCID: PMC2818561          DOI: 10.1021/jp9083635

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  49 in total

1.  Bacterial cell surface display of organophosphorus hydrolase for selective screening of improved hydrolysis of organophosphate nerve agents.

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2.  Entrapping enzyme in a functionalized nanoporous support.

Authors:  Chenghong Lei; Yongsoon Shin; Jun Liu; Eric J Ackerman
Journal:  J Am Chem Soc       Date:  2002-09-25       Impact factor: 15.419

3.  Enhancement of diffusion-controlled reaction rates by surface-induced orientational restriction.

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4.  Validation of the 53A6 GROMOS force field.

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Journal:  Eur Biophys J       Date:  2005-04-01       Impact factor: 1.733

5.  Mesoporous silica nanoparticle based controlled release, drug delivery, and biosensor systems.

Authors:  Brian G Trewyn; Supratim Giri; Igor I Slowing; Victor S-Y Lin
Journal:  Chem Commun (Camb)       Date:  2007-03-20       Impact factor: 6.222

6.  Biosensing paraoxon in simulated environmental samples by immobilized organophosphorus hydrolase in functionalized mesoporous silica.

Authors:  Chenghong Lei; Michelle M Valenta; K Prasad Saripalli; Eric J Ackerman
Journal:  J Environ Qual       Date:  2007-01-09       Impact factor: 2.751

7.  Directed evolution of phosphotriesterase from Pseudomonas diminuta for heterologous expression in Escherichia coli results in stabilization of the metal-free state.

Authors:  C Roodveldt; D S Tawfik
Journal:  Protein Eng Des Sel       Date:  2005-01       Impact factor: 1.650

8.  Stereoselective detoxification of chiral sarin and soman analogues by phosphotriesterase.

Authors:  W S Li; K T Lum; M Chen-Goodspeed; M A Sogorb; F M Raushel
Journal:  Bioorg Med Chem       Date:  2001-08       Impact factor: 3.641

9.  A new GROMOS force field for hexopyranose-based carbohydrates.

Authors:  Roberto D Lins; Philippe H Hünenberger
Journal:  J Comput Chem       Date:  2005-10       Impact factor: 3.376

10.  Purification and properties of the phosphotriesterase from Pseudomonas diminuta.

Authors:  D P Dumas; S R Caldwell; J R Wild; F M Raushel
Journal:  J Biol Chem       Date:  1989-11-25       Impact factor: 5.157

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  8 in total

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Journal:  Curr Opin Struct Biol       Date:  2015-04-04       Impact factor: 6.809

2.  Conformational variability of organophosphorus hydrolase upon soman and paraoxon binding.

Authors:  Diego E B Gomes; Roberto D Lins; Pedro G Pascutti; Chenghong Lei; Thereza A Soares
Journal:  J Phys Chem B       Date:  2011-12-05       Impact factor: 2.991

3.  Non-destructively shattered mesoporous silica for protein drug delivery.

Authors:  Chenghong Lei; Baowei Chen; Xiaolin Li; Wen Qi; Jun Liu
Journal:  Microporous Mesoporous Mater       Date:  2013-07-15       Impact factor: 5.455

4.  Engineering and introduction of de novo disulphide bridges in organophosphorus hydrolase enzyme for thermostability improvement.

Authors:  Gholamreza Farnoosh; Khosro Khajeh; Ali Mohammad Latifi; Hossein Aghamollaei
Journal:  J Biosci       Date:  2016-12       Impact factor: 1.826

5.  Laccase-immobilized tannic acid-mediated surface modification of halloysite nanotubes for efficient bisphenol-A degradation.

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Journal:  RSC Adv       Date:  2019-11-27       Impact factor: 3.361

6.  Burkholderia cepacia lipase immobilized on heterofunctional magnetic nanoparticles and its application in biodiesel synthesis.

Authors:  Kai Li; Yanli Fan; Yaojia He; Leping Zeng; Xiaotao Han; Yunjun Yan
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7.  Computational and network pharmacology analysis of bioflavonoids as possible natural antiviral compounds in COVID-19.

Authors:  Rajesh Patil; Rupesh Chikhale; Pukar Khanal; Nilambari Gurav; Muniappan Ayyanar; Saurabh Sinha; Satyendra Prasad; Yadu Nandan Dey; Manish Wanjari; Shailendra S Gurav
Journal:  Inform Med Unlocked       Date:  2020-12-23

8.  In Silico Drug Repurposing of FDA-Approved Drugs Highlighting Promacta as a Potential Inhibitor of H7N9 Influenza Virus.

Authors:  Sphamandla E Mtambo; Hezekiel M Kumalo
Journal:  Molecules       Date:  2022-07-15       Impact factor: 4.927

  8 in total

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