Literature DB >> 19936627

Sirtuin/Sir2 phylogeny, evolutionary considerations and structural conservation.

Sebastian Greiss1, Anton Gartner.   

Abstract

The sirtuins are a protein family named after the first identified member, S. cerevisiae Sir2p. Sirtuins are protein deacetylases whose activity is dependent on NAD(+) as a cosubstrate. They are structurally defined by two central domains that together form a highly conserved catalytic center, which catalyzes the transfer of an acetyl moiety from acetyllysine to NAD(+), yielding nicotinamide, the unique metabolite O-acetyl-ADP-ribose and deacetylated lysine. One or more sirtuins are present in virtually all species from bacteria to mammals. Here we describe a phylogenetic analysis of sirtuins. Based on their phylogenetic relationship, sirtuins can be grouped into over a dozen classes and subclasses. Humans, like most vertebrates, have seven sirtuins: SIRT1-SIRT7. These function in diverse cellular pathways, regulating transcriptional repression, aging, metabolism, DNA damage responses and apoptosis. We show that these seven sirtuins arose early during animal evolution. Conserved residues cluster around the catalytic center of known sirtuin family members.

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Year:  2009        PMID: 19936627      PMCID: PMC3710699          DOI: 10.1007/s10059-009-0169-x

Source DB:  PubMed          Journal:  Mol Cells        ISSN: 1016-8478            Impact factor:   5.034


  100 in total

1.  Role for human SIRT2 NAD-dependent deacetylase activity in control of mitotic exit in the cell cycle.

Authors:  Sylvia C Dryden; Fatimah A Nahhas; James E Nowak; Anton-Scott Goustin; Michael A Tainsky
Journal:  Mol Cell Biol       Date:  2003-05       Impact factor: 4.272

2.  Acetylation-dependent ADP-ribosylation by Trypanosoma brucei Sir2.

Authors:  Terri M Kowieski; Susan Lee; John M Denu
Journal:  J Biol Chem       Date:  2007-12-27       Impact factor: 5.157

3.  Silent information regulator 2 family of NAD- dependent histone/protein deacetylases generates a unique product, 1-O-acetyl-ADP-ribose.

Authors:  K G Tanner; J Landry; R Sternglanz; J M Denu
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

4.  Nucleocytoplasmic shuttling of the NAD+-dependent histone deacetylase SIRT1.

Authors:  Masaya Tanno; Jun Sakamoto; Tetsuji Miura; Kazuaki Shimamoto; Yoshiyuki Horio
Journal:  J Biol Chem       Date:  2006-12-30       Impact factor: 5.157

5.  The SIR2/3/4 complex and SIR2 alone promote longevity in Saccharomyces cerevisiae by two different mechanisms.

Authors:  M Kaeberlein; M McVey; L Guarente
Journal:  Genes Dev       Date:  1999-10-01       Impact factor: 11.361

6.  Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

Authors:  Andrew M Waterhouse; James B Procter; David M A Martin; Michèle Clamp; Geoffrey J Barton
Journal:  Bioinformatics       Date:  2009-01-16       Impact factor: 6.937

7.  The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.

Authors:  Nicole King; M Jody Westbrook; Susan L Young; Alan Kuo; Monika Abedin; Jarrod Chapman; Stephen Fairclough; Uffe Hellsten; Yoh Isogai; Ivica Letunic; Michael Marr; David Pincus; Nicholas Putnam; Antonis Rokas; Kevin J Wright; Richard Zuzow; William Dirks; Matthew Good; David Goodstein; Derek Lemons; Wanqing Li; Jessica B Lyons; Andrea Morris; Scott Nichols; Daniel J Richter; Asaf Salamov; J G I Sequencing; Peer Bork; Wendell A Lim; Gerard Manning; W Todd Miller; William McGinnis; Harris Shapiro; Robert Tjian; Igor V Grigoriev; Daniel Rokhsar
Journal:  Nature       Date:  2008-02-14       Impact factor: 49.962

8.  Drosophila Sir2 is required for heterochromatic silencing and by euchromatic Hairy/E(Spl) bHLH repressors in segmentation and sex determination.

Authors:  Miriam I Rosenberg; Susan M Parkhurst
Journal:  Cell       Date:  2002-05-17       Impact factor: 41.582

9.  The Trichoplax genome and the nature of placozoans.

Authors:  Mansi Srivastava; Emina Begovic; Jarrod Chapman; Nicholas H Putnam; Uffe Hellsten; Takeshi Kawashima; Alan Kuo; Therese Mitros; Asaf Salamov; Meredith L Carpenter; Ana Y Signorovitch; Maria A Moreno; Kai Kamm; Jane Grimwood; Jeremy Schmutz; Harris Shapiro; Igor V Grigoriev; Leo W Buss; Bernd Schierwater; Stephen L Dellaporta; Daniel S Rokhsar
Journal:  Nature       Date:  2008-08-21       Impact factor: 49.962

Review 10.  Conserved metabolic regulatory functions of sirtuins.

Authors:  Bjoern Schwer; Eric Verdin
Journal:  Cell Metab       Date:  2008-02       Impact factor: 27.287

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  77 in total

1.  Tissue-specific gene expression and fasting regulation of sirtuin family in gilthead sea bream (Sparus aurata).

Authors:  Paula Simó-Mirabet; Azucena Bermejo-Nogales; Josep Alvar Calduch-Giner; Jaume Pérez-Sánchez
Journal:  J Comp Physiol B       Date:  2016-07-18       Impact factor: 2.200

2.  A mechanism-based potent sirtuin inhibitor containing Nε-thiocarbamoyl-lysine (TuAcK).

Authors:  Brett M Hirsch; Yujun Hao; Xiaopeng Li; Chrys Wesdemiotis; Zhenghe Wang; Weiping Zheng
Journal:  Bioorg Med Chem Lett       Date:  2011-06-22       Impact factor: 2.823

3.  The diversity of histone versus nonhistone sirtuin substrates.

Authors:  Paloma Martínez-Redondo; Alejandro Vaquero
Journal:  Genes Cancer       Date:  2013-03

Review 4.  Functions of the poly(ADP-ribose) polymerase superfamily in plants.

Authors:  Rebecca S Lamb; Matteo Citarelli; Sachin Teotia
Journal:  Cell Mol Life Sci       Date:  2011-08-23       Impact factor: 9.261

5.  Evolution of Distinct Responses to Low NAD+ Stress by Rewiring the Sir2 Deacetylase Network in Yeasts.

Authors:  Kristen M Humphrey; Lisha Zhu; Meleah A Hickman; Shirin Hasan; Haniam Maria; Tao Liu; Laura N Rusche
Journal:  Genetics       Date:  2020-02-18       Impact factor: 4.562

6.  Interplay between the bacterial protein deacetylase CobB and the second messenger c-di-GMP.

Authors:  Zhaowei Xu; Hainan Zhang; Xingrun Zhang; Hewei Jiang; Chengxi Liu; Fanlin Wu; Lili Qian; Bingbing Hao; Daniel M Czajkowsky; Shujuan Guo; Zhijing Xu; Lijun Bi; Shihua Wang; Haitao Li; Minjia Tan; Wei Yan; Lei Feng; Jingli Hou; Sheng-Ce Tao
Journal:  EMBO J       Date:  2019-08-16       Impact factor: 11.598

Review 7.  Sirtuin 1 and sirtuin 3: physiological modulators of metabolism.

Authors:  Ruben Nogueiras; Kirk M Habegger; Nilika Chaudhary; Brian Finan; Alexander S Banks; Marcelo O Dietrich; Tamas L Horvath; David A Sinclair; Paul T Pfluger; Matthias H Tschöp
Journal:  Physiol Rev       Date:  2012-07       Impact factor: 37.312

8.  Sirt4 is a mitochondrial regulator of metabolism and lifespan in Drosophila melanogaster.

Authors:  Jason G Wood; Bjoern Schwer; Priyan C Wickremesinghe; Davis A Hartnett; Lucas Burhenn; Meyrolin Garcia; Michael Li; Eric Verdin; Stephen L Helfand
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-29       Impact factor: 11.205

Review 9.  Sirtuins-Mediated System-Level Regulation of Mammalian Tissues at the Interface between Metabolism and Cell Cycle: A Systematic Review.

Authors:  Parcival Maissan; Eva J Mooij; Matteo Barberis
Journal:  Biology (Basel)       Date:  2021-03-04

10.  Synthesizing and salvaging NAD: lessons learned from Chlamydomonas reinhardtii.

Authors:  Huawen Lin; Alan L Kwan; Susan K Dutcher
Journal:  PLoS Genet       Date:  2010-09-09       Impact factor: 5.917

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