Literature DB >> 19925790

Single molecule approaches to transcription factor kinetics in living cells.

Gene-Wei Li1, Johan Elf.   

Abstract

Quantitative modeling of intracellular processes often requires information about intracellular rate constants as well as the concentrations of low abundance species in individual cells. Single molecule imaging techniques offer not only new ways for obtaining such information but also the possibilities to test model-based hypotheses that have previously been out of reach for experiments. In this review we highlight some advantages of single molecule techniques and exemplify by their capability to help understanding how transcription factors find their chromosomal binding sites in bacterial cells.

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Year:  2009        PMID: 19925790     DOI: 10.1016/j.febslet.2009.11.035

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  11 in total

1.  Dissecting chromatin interactions in living cells from protein mobility maps.

Authors:  Fabian Erdel; Katharina Müller-Ott; Michael Baum; Malte Wachsmuth; Karsten Rippe
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

2.  A stochastic analysis of autoregulation of gene expression.

Authors:  Renaud Dessalles; Vincent Fromion; Philippe Robert
Journal:  J Math Biol       Date:  2017-03-13       Impact factor: 2.259

3.  Stochastic timing in gene expression for simple regulatory strategies.

Authors:  Alma Dal Co; Marco Cosentino Lagomarsino; Michele Caselle; Matteo Osella
Journal:  Nucleic Acids Res       Date:  2017-02-17       Impact factor: 16.971

4.  Activated STAT1 transcription factors conduct distinct saltatory movements in the cell nucleus.

Authors:  Jasmin Speil; Eugen Baumgart; Jan-Peter Siebrasse; Roman Veith; Uwe Vinkemeier; Ulrich Kubitscheck
Journal:  Biophys J       Date:  2011-12-07       Impact factor: 4.033

Review 5.  Bacterial Vivisection: How Fluorescence-Based Imaging Techniques Shed a Light on the Inner Workings of Bacteria.

Authors:  Alexander Cambré; Abram Aertsen
Journal:  Microbiol Mol Biol Rev       Date:  2020-10-28       Impact factor: 11.056

Review 6.  Exploring bacterial cell biology with single-molecule tracking and super-resolution imaging.

Authors:  Andreas Gahlmann; W E Moerner
Journal:  Nat Rev Microbiol       Date:  2014-01       Impact factor: 60.633

7.  Microdomain organization and frequency-dependence of CREB-dependent transcriptional signaling in heart cells.

Authors:  Evgeny Kobrinsky; Son Q Duong; Anna Sheydina; Nikolai M Soldatov
Journal:  FASEB J       Date:  2011-01-19       Impact factor: 5.191

8.  Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ⁵⁴ (RpoN) regulon of Salmonella Typhimurium LT2.

Authors:  David J Samuels; Jonathan G Frye; Steffen Porwollik; Michael McClelland; Jan Mrázek; Timothy R Hoover; Anna C Karls
Journal:  BMC Genomics       Date:  2013-09-05       Impact factor: 3.969

9.  Quantitation of glucocorticoid receptor DNA-binding dynamics by single-molecule microscopy and FRAP.

Authors:  Femke L Groeneweg; Martin E van Royen; Susanne Fenz; Veer I P Keizer; Bart Geverts; Jurrien Prins; E Ron de Kloet; Adriaan B Houtsmuller; Thomas S Schmidt; Marcel J M Schaaf
Journal:  PLoS One       Date:  2014-03-14       Impact factor: 3.240

Review 10.  Interplay between gene expression noise and regulatory network architecture.

Authors:  Guilhem Chalancon; Charles N J Ravarani; S Balaji; Alfonso Martinez-Arias; L Aravind; Raja Jothi; M Madan Babu
Journal:  Trends Genet       Date:  2012-02-25       Impact factor: 11.639

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