Literature DB >> 19921448

Genome-wide approaches to determining origin distribution.

Jean-Charles Cadoret1, Marie-Noëlle Prioleau.   

Abstract

Genome integrity depends upon a highly co-ordinated process that ensures the exact duplication of the genome at each cell cycle. Genomic mapping of DNA replication starting points in mammals, known as origins of replication, is an important step towards our understanding of how this essential mechanism is regulated throughout complex genomes. Two recent studies carried out in both human and mouse cells have revealed a strong association between replication origins and transcriptional regulatory elements. This strong overlap raises the question of how gene deserts, also lacking replication origins, are properly replicated in conditions where replication is disrupted. It also provides valuable information forward the identification of key regulatory factors of DNA replication initiation. Here, we review what these large-scale mappings of replication origins have brought to our understanding of replication initiation and what are the future prospects.

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Year:  2010        PMID: 19921448     DOI: 10.1007/s10577-009-9094-2

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  34 in total

1.  Evidence that a single replication fork proceeds from early to late replicating domains in the IgH locus in a non-B cell line.

Authors:  O V Ermakova; L H Nguyen; R D Little; C Chevillard; R Riblet; N Ashouian; B K Birshtein; C L Schildkraut
Journal:  Mol Cell       Date:  1999-03       Impact factor: 17.970

2.  Dynamics of DNA replication in mammalian somatic cells: nucleotide pool modulates origin choice and interorigin spacing.

Authors:  Mauro Anglana; Françoise Apiou; Aaron Bensimon; Michelle Debatisse
Journal:  Cell       Date:  2003-08-08       Impact factor: 41.582

3.  Chromatin regulates origin activity in Drosophila follicle cells.

Authors:  Bhagwan D Aggarwal; Brian R Calvi
Journal:  Nature       Date:  2004-07-15       Impact factor: 49.962

4.  Human gene organization driven by the coordination of replication and transcription.

Authors:  Maxime Huvet; Samuel Nicolay; Marie Touchon; Benjamin Audit; Yves d'Aubenton-Carafa; Alain Arneodo; Claude Thermes
Journal:  Genome Res       Date:  2007-08-03       Impact factor: 9.043

Review 5.  Replication in context: dynamic regulation of DNA replication patterns in metazoans.

Authors:  Mirit I Aladjem
Journal:  Nat Rev Genet       Date:  2007-07-10       Impact factor: 53.242

6.  Excess MCM proteins protect human cells from replicative stress by licensing backup origins of replication.

Authors:  Arkaitz Ibarra; Etienne Schwob; Juan Méndez
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-25       Impact factor: 11.205

7.  The units of DNA replication in the mammalian chromosomes: evidence for a large size of replication units.

Authors:  Y B Yurov; N A Liapunova
Journal:  Chromosoma       Date:  1977-04-19       Impact factor: 4.316

Review 8.  Replication initiation point mapping.

Authors:  S A Gerbi; A K Bielinsky
Journal:  Methods       Date:  1997-11       Impact factor: 3.608

9.  Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome.

Authors:  Hualin Xi; Hennady P Shulha; Jane M Lin; Teresa R Vales; Yutao Fu; David M Bodine; Ronald D G McKay; Josh G Chenoweth; Paul J Tesar; Terrence S Furey; Bing Ren; Zhiping Weng; Gregory E Crawford
Journal:  PLoS Genet       Date:  2007-07-02       Impact factor: 5.917

10.  Global reorganization of replication domains during embryonic stem cell differentiation.

Authors:  Ichiro Hiratani; Tyrone Ryba; Mari Itoh; Tomoki Yokochi; Michaela Schwaiger; Chia-Wei Chang; Yung Lyou; Tim M Townes; Dirk Schübeler; David M Gilbert
Journal:  PLoS Biol       Date:  2008-10-07       Impact factor: 8.029

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  11 in total

Review 1.  Genomic approaches to the initiation of DNA replication and chromatin structure reveal a complex relationship.

Authors:  Françoise Meisch; Marie-Noëlle Prioleau
Journal:  Brief Funct Genomics       Date:  2011-01-28       Impact factor: 4.241

2.  S-phase progression in mammalian cells: modelling the influence of nuclear organization.

Authors:  Alex Shaw; Pedro Olivares-Chauvet; Apolinar Maya-Mendoza; Dean A Jackson
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

3.  Eukaryotic origin-dependent DNA replication in vitro reveals sequential action of DDK and S-CDK kinases.

Authors:  Ryan C Heller; Sukhyun Kang; Wendy M Lam; Shuyan Chen; Clara S Chan; Stephen P Bell
Journal:  Cell       Date:  2011-07-08       Impact factor: 41.582

Review 4.  Evaluating genome-scale approaches to eukaryotic DNA replication.

Authors:  David M Gilbert
Journal:  Nat Rev Genet       Date:  2010-09-01       Impact factor: 53.242

Review 5.  Efficiency and equity in origin licensing to ensure complete DNA replication.

Authors:  Liu Mei; Jeanette Gowen Cook
Journal:  Biochem Soc Trans       Date:  2021-11-01       Impact factor: 4.919

6.  Initiation of DNA Replication in the Human Genome.

Authors:  Manuel S Valenzuela
Journal:  Hereditary Genet       Date:  2012-02-08

Review 7.  Spatio-temporal organization of replication in bacteria and eukaryotes (nucleoids and nuclei).

Authors:  Dean Jackson; Xindan Wang; David Z Rudner
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-08-01       Impact factor: 10.005

8.  Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks.

Authors:  Celina Costas; Maria de la Paz Sanchez; Hume Stroud; Yanchun Yu; Juan Carlos Oliveros; Suhua Feng; Alberto Benguria; Irene López-Vidriero; Xiaoyu Zhang; Roberto Solano; Steven E Jacobsen; Crisanto Gutierrez
Journal:  Nat Struct Mol Biol       Date:  2011-02-06       Impact factor: 15.369

9.  The epigenetic control of E-box and Myc-dependent chromatin modifications regulate the licensing of lamin B2 origin during cell cycle.

Authors:  Manickavinayaham Swarnalatha; Anup Kumar Singh; Vijay Kumar
Journal:  Nucleic Acids Res       Date:  2012-07-05       Impact factor: 16.971

10.  Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone.

Authors:  Yoav Lubelsky; Takayo Sasaki; Marjorie A Kuipers; Isabelle Lucas; Michelle M Le Beau; Sandra Carignon; Michelle Debatisse; Joseph A Prinz; Jonathan H Dennis; David M Gilbert
Journal:  Nucleic Acids Res       Date:  2010-12-09       Impact factor: 16.971

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