Literature DB >> 22855726

Spatio-temporal organization of replication in bacteria and eukaryotes (nucleoids and nuclei).

Dean Jackson1, Xindan Wang, David Z Rudner.   

Abstract

Here we discuss the spatio-temporal organization of replication in eubacteria and eukaryotes. Although there are significant differences in how replication is organized in cells that contain nuclei from those that do not, you will see that organization of replication in all organisms is principally dictated by the structured arrangement of the chromosome. We will begin with how replication is organized in eubacteria with particular emphasis on three well studied model organisms. We will then discuss spatial and temporal organization of replication in eukaryotes highlighting the similarities and differences between these two domains of life.

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Year:  2012        PMID: 22855726      PMCID: PMC3405862          DOI: 10.1101/cshperspect.a010389

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  84 in total

1.  Closing the ring: links between SMC proteins and chromosome partitioning, condensation, and supercoiling.

Authors:  V F Holmes; N R Cozzarelli
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

2.  Topological domain structure of the Escherichia coli chromosome.

Authors:  Lisa Postow; Christine D Hardy; Javier Arsuaga; Nicholas R Cozzarelli
Journal:  Genes Dev       Date:  2004-07-15       Impact factor: 11.361

3.  Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types.

Authors:  Tyrone Ryba; Ichiro Hiratani; Junjie Lu; Mari Itoh; Michael Kulik; Jinfeng Zhang; Thomas C Schulz; Allan J Robins; Stephen Dalton; David M Gilbert
Journal:  Genome Res       Date:  2010-04-29       Impact factor: 9.043

Review 4.  Organization of supercoil domains and their reorganization by transcription.

Authors:  Shuang Deng; Richard A Stein; N Patrick Higgins
Journal:  Mol Microbiol       Date:  2005-09       Impact factor: 3.501

5.  The two Escherichia coli chromosome arms locate to separate cell halves.

Authors:  Xindan Wang; Xun Liu; Christophe Possoz; David J Sherratt
Journal:  Genes Dev       Date:  2006-07-01       Impact factor: 11.361

6.  Global organization of replication time zones of the mouse genome.

Authors:  Shlomit Farkash-Amar; Doron Lipson; Andreas Polten; Alon Goren; Charles Helmstetter; Zohar Yakhini; Itamar Simon
Journal:  Genome Res       Date:  2008-07-30       Impact factor: 9.043

7.  Genome-wide studies highlight indirect links between human replication origins and gene regulation.

Authors:  Jean-Charles Cadoret; Françoise Meisch; Vahideh Hassan-Zadeh; Isabelle Luyten; Claire Guillet; Laurent Duret; Hadi Quesneville; Marie-Noëlle Prioleau
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-06       Impact factor: 11.205

8.  Dynamic behavior of DNA replication domains.

Authors:  E M Manders; J Stap; J Strackee; R van Driel; J A Aten
Journal:  Exp Cell Res       Date:  1996-08-01       Impact factor: 3.905

9.  A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure.

Authors:  Christine D Hardy; Nicholas R Cozzarelli
Journal:  Mol Microbiol       Date:  2005-09       Impact factor: 3.501

10.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

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  16 in total

Review 1.  Early S-phase cell hypersensitivity to heat stress.

Authors:  Nadezhda V Petrova; Artem K Velichko; Sergey V Razin; Omar L Kantidze
Journal:  Cell Cycle       Date:  2015-12-21       Impact factor: 4.534

Review 2.  Regulating DNA replication in plants.

Authors:  Maria de la Paz Sanchez; Celina Costas; Joana Sequeira-Mendes; Crisanto Gutierrez
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-12-01       Impact factor: 10.005

3.  Orc1 Binding to Mitotic Chromosomes Precedes Spatial Patterning during G1 Phase and Assembly of the Origin Recognition Complex in Human Cells.

Authors:  Nihan Kara; Manzar Hossain; Supriya G Prasanth; Bruce Stillman
Journal:  J Biol Chem       Date:  2015-03-17       Impact factor: 5.157

Review 4.  How and why multiple MCMs are loaded at origins of DNA replication.

Authors:  Shankar P Das; Nicholas Rhind
Journal:  Bioessays       Date:  2016-05-13       Impact factor: 4.345

5.  Lack of the H-NS Protein Results in Extended and Aberrantly Positioned DNA during Chromosome Replication and Segregation in Escherichia coli.

Authors:  Emily Helgesen; Solveig Fossum-Raunehaug; Kirsten Skarstad
Journal:  J Bacteriol       Date:  2016-03-31       Impact factor: 3.490

6.  DnaN clamp zones provide a platform for spatiotemporal coupling of mismatch detection to DNA replication.

Authors:  Justin S Lenhart; Anushi Sharma; Manju M Hingorani; Lyle A Simmons
Journal:  Mol Microbiol       Date:  2012-12-11       Impact factor: 3.501

Review 7.  Organization and segregation of bacterial chromosomes.

Authors:  Xindan Wang; Paula Montero Llopis; David Z Rudner
Journal:  Nat Rev Genet       Date:  2013-02-12       Impact factor: 53.242

8.  Chromosome organization and replisome dynamics in Mycobacterium smegmatis.

Authors:  Isabella Santi; John D McKinney
Journal:  MBio       Date:  2015-02-17       Impact factor: 7.867

9.  Choreography of the Mycobacterium replication machinery during the cell cycle.

Authors:  Damian Trojanowski; Katarzyna Ginda; Monika Pióro; Joanna Hołówka; Partycja Skut; Dagmara Jakimowicz; Jolanta Zakrzewska-Czerwińska
Journal:  MBio       Date:  2015-02-17       Impact factor: 7.867

Review 10.  Replicating DNA by cell factories: roles of central carbon metabolism and transcription in the control of DNA replication in microbes, and implications for understanding this process in human cells.

Authors:  Sylwia Barańska; Monika Glinkowska; Anna Herman-Antosiewicz; Monika Maciąg-Dorszyńska; Dariusz Nowicki; Agnieszka Szalewska-Pałasz; Alicja Węgrzyn; Grzegorz Węgrzyn
Journal:  Microb Cell Fact       Date:  2013-05-29       Impact factor: 5.328

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