Literature DB >> 19919824

Exploring the dihydrodipicolinate synthase tetramer: how resilient is the dimer-dimer interface?

Michael D W Griffin1, Renwick C J Dobson, Juliet A Gerrard, Matthew A Perugini.   

Abstract

Dihydrodipicolinate synthase (DHDPS, E.C. 4.2.1.52) is a tetrameric enzyme that catalyses the first committed step of the lysine biosynthetic pathway. Dimeric variants of DHDPS have impaired catalytic activity due to aberrant protein motions within the dimer unit. Thus, it is thought that the tetrameric structure functions to restrict these motions and optimise enzyme dynamics for catalysis. Despite the importance of dimer-dimer association, the interface between subunits of each dimer is small, accounting for only 4.3% of the total monomer surface area, and the structure of the interface is not conserved across species. We have probed the tolerance of dimer-dimer association to mutation by introducing amino acid substitutions within the interface. All point mutations resulted in destabilisation of the 'dimer of dimers' tetrameric structure. Both the position of the mutation in the interface and the physico-chemical nature of the substitution appeared to effect tetramerisation. Despite only weak destabilisation of the tetramer by some mutations, catalytic activity was reduced to approximately 10-15% of the wild-type in all cases, suggesting that the dimer-dimer interface is finely tuned to optimise function. Copyright (c) 2009 Elsevier Inc. All rights reserved.

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Year:  2009        PMID: 19919824     DOI: 10.1016/j.abb.2009.11.014

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  15 in total

1.  Cloning, expression, purification and crystallization of dihydrodipicolinate synthase from the grapevine Vitis vinifera.

Authors:  Sarah C Atkinson; Con Dogovski; Janet Newman; Renwick C J Dobson; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-11-25

2.  Structure of the 4-hydroxy-tetrahydrodipicolinate synthase from the thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV and the phylogeny of the aminotransferase pathway.

Authors:  Rob A Schmitz; Andreas Dietl; Melanie Müller; Tom Berben; Huub J M Op den Camp; Thomas R M Barends
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2020-04-28       Impact factor: 1.056

3.  Cloning, expression, purification and crystallization of dihydrodipicolinate synthase from the psychrophile Shewanella benthica.

Authors:  Jacinta M Wubben; Con Dogovski; Renwick C J Dobson; Rachel Codd; Juliet A Gerrard; Michael W Parker; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-10-29

Review 4.  Molecular evolution of an oligomeric biocatalyst functioning in lysine biosynthesis.

Authors:  Tatiana P Soares da Costa; Belinda M Abbott; Anthony R Gendall; Santosh Panjikar; Matthew A Perugini
Journal:  Biophys Rev       Date:  2017-12-05

5.  Crystallization and preliminary X-ray diffraction analysis of dihydrodipicolinate synthase 2 from Arabidopsis thaliana.

Authors:  Michael D W Griffin; Jagan M Billakanti; Juliet A Gerrard; Renwick C J Dobson; F Grant Pearce
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-10-27

6.  Medicago truncatula dihydrodipicolinate synthase (DHDPS) enzymes display novel regulatory properties.

Authors:  Ellen Erzeel; Pieter Van Bochaute; Tran T Thu; Geert Angenon
Journal:  Plant Mol Biol       Date:  2013-01-18       Impact factor: 4.076

7.  Structural, kinetic and computational investigation of Vitis vinifera DHDPS reveals new insight into the mechanism of lysine-mediated allosteric inhibition.

Authors:  Sarah C Atkinson; Con Dogovski; Matthew T Downton; Peter E Czabotar; Renwick C J Dobson; Juliet A Gerrard; John Wagner; Matthew A Perugini
Journal:  Plant Mol Biol       Date:  2013-01-26       Impact factor: 4.076

8.  Cloning to crystallization of dihydrodipicolinate synthase from the intracellular pathogen Legionella pneumophila.

Authors:  Tanzeela Siddiqui; Jason J Paxman; Con Dogovski; Santosh Panjikar; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-09-30

9.  Crystal, solution and in silico structural studies of dihydrodipicolinate synthase from the common grapevine.

Authors:  Sarah C Atkinson; Con Dogovski; Matthew T Downton; F Grant Pearce; Cyril F Reboul; Ashley M Buckle; Juliet A Gerrard; Renwick C J Dobson; John Wagner; Matthew A Perugini
Journal:  PLoS One       Date:  2012-06-25       Impact factor: 3.240

10.  Characterization of recombinant dihydrodipicolinate synthase from the bread wheat Triticum aestivum.

Authors:  Ruchi Gupta; Campbell J Hogan; Matthew A Perugini; Tatiana P Soares da Costa
Journal:  Planta       Date:  2018-05-09       Impact factor: 4.116

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