Literature DB >> 19919152

Potassium-lead-switched G-quadruplexes: a new class of DNA logic gates.

Tao Li1, Erkang Wang, Shaojun Dong.   

Abstract

A cation-driven allosteric G-quadruplex DNAzyme (PW17) was utilized to devise a conceptually new class of DNA logic gate based on cation-tuned ligand binding and release. K(+) favors the binding of hemin to parallel-stranded PW17, thereby promoting the DNAzyme activity, whereas Pb(2+) induces PW17 to undergo a parallel-to-antiparallel conformation transition and thus drives hemin to release from the G-quadruplex, deactivating the DNAzyme. Such a K(+)-Pb(2+) switched G-quadruplex, in fact, functions as a two-input INHIBIT logic gate. With the introduction of another input EDTA, this G-quadruplex can be further utilized to construct a reversibly operated IMPLICATION gate.

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Year:  2009        PMID: 19919152     DOI: 10.1021/ja9051075

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  38 in total

Review 1.  Metal ion sensors based on DNAzymes and related DNA molecules.

Authors:  Xiao-Bing Zhang; Rong-Mei Kong; Yi Lu
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2011       Impact factor: 10.745

2.  A Fluorescence Sensor for Lead (II) Ions Determination Based on Label-Free Gold Nanoparticles (GNPs)-DNAzyme Using Time-Gated Mode in Aqueous Solution.

Authors:  Xiao-Yu Wang; Cheng-Gang Niu; Li-Juan Guo; Liu-Yin Hu; Sheng-Quan Wu; Guang-Ming Zeng; Fei Li
Journal:  J Fluoresc       Date:  2016-12-01       Impact factor: 2.217

3.  Label-free, dual-analyte electrochemical biosensors: a new class of molecular-electronic logic gates.

Authors:  Fan Xia; Xiaolei Zuo; Renqiang Yang; Ryan J White; Yi Xiao; Di Kang; Xiong Gong; Arica A Lubin; Alexis Vallée-Bélisle; Jonathan D Yuen; Ben Y B Hsu; Kevin W Plaxco
Journal:  J Am Chem Soc       Date:  2010-06-30       Impact factor: 15.419

4.  Alphanumerical Visual Display Made of DNA Logic Gates for Drug Susceptibility Testing of Pathogens.

Authors:  Ryan P Connelly; Evgeny S Morozkin; Yulia V Gerasimova
Journal:  Chembiochem       Date:  2018-01-04       Impact factor: 3.164

5.  Tuning supramolecular G-quadruplexes with mono- and divalent cations.

Authors:  Mariana Martín-Hidalgo; Marilyn García-Arriaga; Fernando González; José M Rivera
Journal:  Supramol Chem       Date:  2014-06-25       Impact factor: 1.688

6.  Highly active G-quadruplex/hemin DNAzyme for sensitive colorimetric determination of lead(II).

Authors:  Jielin Chen; Yingying Zhang; Mingpan Cheng; Jean-Louis Mergny; Qianmei Lin; Jun Zhou; Huangxian Ju
Journal:  Mikrochim Acta       Date:  2019-11-15       Impact factor: 5.833

7.  A survey of advancements in nucleic acid-based logic gates and computing for applications in biotechnology and biomedicine.

Authors:  Cuichen Wu; Shuo Wan; Weijia Hou; Liqin Zhang; Jiehua Xu; Cheng Cui; Yanyue Wang; Jun Hu; Weihong Tan
Journal:  Chem Commun (Camb)       Date:  2015-03-04       Impact factor: 6.222

8.  A highly selective lead sensor based on a classic lead DNAzyme.

Authors:  Tian Lan; Kimberly Furuya; Yi Lu
Journal:  Chem Commun (Camb)       Date:  2010-04-20       Impact factor: 6.222

9.  "One ring to bind them all"-part I: the efficiency of the macrocyclic scaffold for g-quadruplex DNA recognition.

Authors:  David Monchaud; Anton Granzhan; Nicolas Saettel; Aurore Guédin; Jean-Louis Mergny; Marie-Paule Teulade-Fichou
Journal:  J Nucleic Acids       Date:  2010-05-24

10.  Use of processed data to design an orderly logic gate to construct plasmids in GenoCAD.

Authors:  Pei Shi; Tao Wu; Panpan Li; Bingjie Guo; Gang Fang; Yafei Dong
Journal:  IET Syst Biol       Date:  2017-04       Impact factor: 1.615

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