Literature DB >> 15665131

Structure of fully hydrated fluid phase DMPC and DLPC lipid bilayers using X-ray scattering from oriented multilamellar arrays and from unilamellar vesicles.

Norbert Kucerka1, Yufeng Liu, Nanjun Chu, Horia I Petrache, Stephanie Tristram-Nagle, John F Nagle.   

Abstract

Quantitative structures of the fully hydrated fluid phases of dimyristoylphosphatidylcholine (DMPC) and dilauroylphosphatidylcholine (DLPC) were obtained at 30 degrees C. Data for the relative form factors F(q(z)) for DMPC were obtained using a combination of four methods. 1), Volumetric data provided F(0). 2), Diffuse x-ray scattering from oriented stacks of bilayers provided relative form factors |F(q(z))| for high q(z), 0.22 < q(z) < 0.8 A(-1). 3), X-ray scattering from extruded unilamellar vesicles with diameter 600 A provided |F(q(z))| for low q(z), 0.1 < q(z) < 0.3 A(-1). 4), Previous measurements using a liquid crystallographic x-ray method provided |F(2 pi h/D)| for h = 1 and 2 for a range of nearly fully hydrated D-spacings. The data from method 4 overlap and validate the new unilamellar vesicles data for DMPC, so method 4 is not required for DLPC or future studies. We used hybrid electron density models to obtain structural results from these form factors. Comparison of the model electron density profiles with that of gel phase DMPC provides areas per lipid A, 60.6 +/- 0.5 A(2) for DMPC and 63.2 +/- 0.5 A(2) for DLPC. Constraints on the model provided by volume measurements and component volumes obtained from simulations put the electron density profiles rho(z) and the corresponding form factors F(q(z)) on absolute scales. Various thicknesses, such as the hydrophobic thickness and the steric thickness, are obtained and compared to literature values.

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Year:  2005        PMID: 15665131      PMCID: PMC1305359          DOI: 10.1529/biophysj.104.056606

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  28 in total

1.  Method for obtaining structure and interactions from oriented lipid bilayers.

Authors:  Y Lyatskaya; Y Liu; S Tristram-Nagle; J Katsaras; J F Nagle
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2000-12-22

2.  Structural information from multilamellar liposomes at full hydration: full q-range fitting with high quality x-ray data.

Authors:  G Pabst; M Rappolt; H Amenitsch; P Laggner
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  2000-09

3.  Diffuse scattering provides material parameters and electron density profiles of biomembranes.

Authors:  Yufeng Liu; John F Nagle
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-04-30

4.  Area per lipid and acyl length distributions in fluid phosphatidylcholines determined by (2)H NMR spectroscopy.

Authors:  H I Petrache; S W Dodd; M F Brown
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

Review 5.  Structure of lipid bilayers.

Authors:  J F Nagle; S Tristram-Nagle
Journal:  Biochim Biophys Acta       Date:  2000-11-10

6.  Bilayer thickness and lipid interface area in unilamellar extruded 1,2-diacylphosphatidylcholine liposomes: a small-angle neutron scattering study.

Authors:  P Balgavý; M Dubnicková; N Kucerka; M A Kiselev; S P Yaradaikin; D Uhríková
Journal:  Biochim Biophys Acta       Date:  2001-05-02

7.  Membrane lateral compressibility determined by NMR and x-ray diffraction: effect of acyl chain polyunsaturation.

Authors:  B W Koenig; H H Strey; K Gawrisch
Journal:  Biophys J       Date:  1997-10       Impact factor: 4.033

8.  Structure of gel phase DMPC determined by X-ray diffraction.

Authors:  Stephanie Tristram-Nagle; Yufeng Liu; Justin Legleiter; John F Nagle
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

9.  Structure and fluctuations of charged phosphatidylserine bilayers in the absence of salt.

Authors:  Horia I Petrache; Stephanie Tristram-Nagle; Klaus Gawrisch; Daniel Harries; V Adrian Parsegian; John F Nagle
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

10.  Determination of bilayer thickness and lipid surface area in unilamellar dimyristoylphosphatidylcholine vesicles from small-angle neutron scattering curves: a comparison of evaluation methods.

Authors:  Norbert Kucerka; Mikhail A Kiselev; Pavol Balgavý
Journal:  Eur Biophys J       Date:  2003-09-03       Impact factor: 1.733

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  172 in total

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Authors:  Kevin C Song; Philip W Livanec; Jeffery B Klauda; Krzysztof Kuczera; Robert C Dunn; Wonpil Im
Journal:  J Phys Chem B       Date:  2011-04-22       Impact factor: 2.991

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Authors:  Gergely Nagy; Jörg Pieper; Sashka B Krumova; László Kovács; Marcus Trapp; Győző Garab; Judith Peters
Journal:  Photosynth Res       Date:  2011-11-04       Impact factor: 3.573

3.  Determination of membrane-insertion free energies by molecular dynamics simulations.

Authors:  James Gumbart; Benoît Roux
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

4.  Effect of cholesterol on the lateral nanoscale dynamics of fluid membranes.

Authors:  Clare L Armstrong; Matthew A Barrett; Arno Hiess; Tim Salditt; John Katsaras; An-Chang Shi; Maikel C Rheinstädter
Journal:  Eur Biophys J       Date:  2012-06-23       Impact factor: 1.733

5.  Simulation of nanoparticle permeation through a lipid membrane.

Authors:  Steven L Fiedler; Angela Violi
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

6.  A Practical Implicit Membrane Potential for NMR Structure Calculations of Membrane Proteins.

Authors:  Ye Tian; Charles D Schwieters; Stanley J Opella; Francesca M Marassi
Journal:  Biophys J       Date:  2015-08-04       Impact factor: 4.033

7.  Structural Behavior of the Peptaibol Harzianin HK VI in a DMPC Bilayer: Insights from MD Simulations.

Authors:  Marina Putzu; Sezgin Kara; Sergii Afonin; Stephan L Grage; Andrea Bordessa; Grégory Chaume; Thierry Brigaud; Anne S Ulrich; Tomáš Kubař
Journal:  Biophys J       Date:  2017-06-20       Impact factor: 4.033

8.  Comparative molecular dynamics study of lipid membranes containing cholesterol and ergosterol.

Authors:  Jacek Czub; Maciej Baginski
Journal:  Biophys J       Date:  2006-01-06       Impact factor: 4.033

9.  Free-energy profiles for ions in the influenza M2-TMD channel.

Authors:  Morad Mustafa; Douglas J Henderson; David D Busath
Journal:  Proteins       Date:  2009-09

10.  The gramicidin channel ion permeation free-energy profile: direct and indirect effects of CHARMM force field improvements.

Authors:  Morad Mustafa; David D Busath
Journal:  Interdiscip Sci       Date:  2009-06       Impact factor: 2.233

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