Literature DB >> 19915158

Publishing flow cytometry data.

D F Alvarez1, K Helm, J Degregori, M Roederer, S Majka.   

Abstract

Cellular measurements by flow cytometric analysis constitute an important step toward understanding individual attributes within a population of cells. Assessing individual cells within a population by protein expression using fluorescently labeled antibodies and other fluorescent probes can identify cellular patterns. The technology for accurately identifying subtle changes in protein expression within a population of cells using a vast array of technology has resulted in controversy and questions regarding reproducibility, which can be explained at least in part by the absence of standard methods to facilitate comparison of flow cytometric data. The complexity of technological advancements and the need for improvements in biological resolution results in the generation of complex data that demands the use of minimum standards for their publication. Herein we present a summarized view for the inclusion of consistent flow cytometric experimental information as supplemental data. Four major points, experimental and sample information, data acquisition, analysis, and presentation are emphasized. Together, these guidelines will facilitate the review and publication of flow cytometry data that provide an accurate foundation for ongoing studies with this evolving technology.

Mesh:

Year:  2009        PMID: 19915158      PMCID: PMC2822558          DOI: 10.1152/ajplung.00313.2009

Source DB:  PubMed          Journal:  Am J Physiol Lung Cell Mol Physiol        ISSN: 1040-0605            Impact factor:   5.464


  21 in total

Review 1.  A practical approach to multicolor flow cytometry for immunophenotyping.

Authors:  N Baumgarth; M Roederer
Journal:  J Immunol Methods       Date:  2000-09-21       Impact factor: 2.303

2.  Lineage relationship and protective immunity of memory CD8 T cell subsets.

Authors:  E John Wherry; Volker Teichgräber; Todd C Becker; David Masopust; Susan M Kaech; Rustom Antia; Ulrich H von Andrian; Rafi Ahmed
Journal:  Nat Immunol       Date:  2003-02-03       Impact factor: 25.606

Review 3.  Seventeen-colour flow cytometry: unravelling the immune system.

Authors:  Stephen P Perfetto; Pratip K Chattopadhyay; Mario Roederer
Journal:  Nat Rev Immunol       Date:  2004-08       Impact factor: 53.106

4.  Guidelines for the presentation of flow cytometric data.

Authors:  Mario Roederer; Zbigniew Darzynkiewicz; David R Parks
Journal:  Methods Cell Biol       Date:  2004       Impact factor: 1.441

5.  A new "Logicle" display method avoids deceptive effects of logarithmic scaling for low signals and compensated data.

Authors:  David R Parks; Mario Roederer; Wayne A Moore
Journal:  Cytometry A       Date:  2006-06       Impact factor: 4.355

6.  Identification and characterization of side population cells in embryonic stem cell cultures.

Authors:  Diego S Vieyra; Allison Rosen; Margaret A Goodell
Journal:  Stem Cells Dev       Date:  2009-10       Impact factor: 3.272

7.  Proposed new data file standard for flow cytometry, version FCS 3.0.

Authors:  L C Seamer; C B Bagwell; L Barden; D Redelman; G C Salzman; J C Wood; R F Murphy
Journal:  Cytometry       Date:  1997-06-01

8.  Two-color immunofluorescence using a fluorescence-activated cell sorter.

Authors:  M R Loken; D R Parks; L A Herzenberg
Journal:  J Histochem Cytochem       Date:  1977-07       Impact factor: 2.479

9.  Cell sorting: automated separation of mammalian cells as a function of intracellular fluorescence.

Authors:  H R Hulett; W A Bonner; J Barrett; L A Herzenberg
Journal:  Science       Date:  1969-11-07       Impact factor: 47.728

10.  B-cell subpopulations identified by two-colour fluorescence analysis.

Authors:  R R Hardy; K Hayakawa; J Haaijman; L A Herzenberg
Journal:  Nature       Date:  1982-06-17       Impact factor: 49.962

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  21 in total

1.  Features of free software packages in flow cytometry: a comparison between four non-commercial software sources.

Authors:  Fazel Sahraneshin Samani; Jodene K Moore; Pardis Khosravani; Marzieh Ebrahimi
Journal:  Cytotechnology       Date:  2013-07-10       Impact factor: 2.058

2.  Hypoxia Prevents Mitochondrial Dysfunction and Senescence in Human c-Kit+ Cardiac Progenitor Cells.

Authors:  Kelli I Korski; Dieter A Kubli; Bingyan J Wang; Farid G Khalafalla; Megan M Monsanto; Fareheh Firouzi; Oscar H Echeagaray; Taeyong Kim; Robert M Adamson; Walter P Dembitsky; Åsa B Gustafsson; Mark A Sussman
Journal:  Stem Cells       Date:  2019-01-30       Impact factor: 6.277

3.  CD4+CD25+Foxp3+ T regulatory cells, Th1 (CCR5, IL-2, IFN-γ) and Th2 (CCR4, IL-4, Il-13) type chemokine receptors and intracellular cytokines in children with common variable immunodeficiency.

Authors:  Necil Kutukculer; Elif Azarsiz; Guzide Aksu; Neslihan Edeer Karaca
Journal:  Int J Immunopathol Pharmacol       Date:  2015-12-18       Impact factor: 3.219

Review 4.  Recommendations from the iSBTc-SITC/FDA/NCI Workshop on Immunotherapy Biomarkers.

Authors:  Lisa H Butterfield; A Karolina Palucka; Cedrik M Britten; Madhav V Dhodapkar; Leif Håkansson; Sylvia Janetzki; Yutaka Kawakami; Thomas-Oliver Kleen; Peter P Lee; Cristina Maccalli; Holden T Maecker; Vernon C Maino; Michele Maio; Anatoli Malyguine; Giuseppe Masucci; Graham Pawelec; Douglas M Potter; Licia Rivoltini; Lupe G Salazar; Dolores J Schendel; Craig L Slingluff; Wenru Song; David F Stroncek; Hideaki Tahara; Magdalena Thurin; Giorgio Trinchieri; Sjoerd H van Der Burg; Theresa L Whiteside; Jon M Wigginton; Francesco Marincola; Samir Khleif; Bernard A Fox; Mary L Disis
Journal:  Clin Cancer Res       Date:  2011-05-10       Impact factor: 12.531

Review 5.  Single cell proteomics in biomedicine: High-dimensional data acquisition, visualization, and analysis.

Authors:  Yapeng Su; Qihui Shi; Wei Wei
Journal:  Proteomics       Date:  2017-02       Impact factor: 3.984

6.  In vitro T lymphocyte proliferation by carboxyfluorescein diacetate succinimidyl ester method is helpful in diagnosing and managing primary immunodeficiencies.

Authors:  Elif Azarsiz; Neslihan Karaca; Birgul Ergun; Mehmet Durmuscan; Necil Kutukculer; Guzide Aksu
Journal:  J Clin Lab Anal       Date:  2017-04-06       Impact factor: 2.352

7.  Identification of B cells through negative gating-An example of the MIFlowCyt standard applied.

Authors:  Darren Blimkie; Edgardo S Fortuno; Francis Thommai; Lixin Xu; Elaine Fernandes; Juliet Crabtree; Annie Rein-Weston; Kirstin Jansen; R R Brinkman; Tobias R Kollmann
Journal:  Cytometry A       Date:  2010-06       Impact factor: 4.355

8.  β-Adrenoceptor Blockade Moderates Neuroinflammation in Male and Female EAE Rats and Abrogates Sexual Dimorphisms in the Major Neuroinflammatory Pathways by Being More Efficient in Males.

Authors:  Ivan Pilipović; Zorica Stojić-Vukanić; Ivana Prijić; Nebojša Jasnić; Jelena Djordjević; Gordana Leposavić
Journal:  Cell Mol Neurobiol       Date:  2022-07-08       Impact factor: 5.046

9.  Cytotoxic and apoptosis-inducing effects of novel 8-amido isocoumarin derivatives against breast cancer cells.

Authors:  Vishal Das; Partha Pratim Kaishap; Gauri Duarah; Channakeshavaiah Chikkaputtaiah; Hari Prasanna Deka Boruah; Mintu Pal
Journal:  Naunyn Schmiedebergs Arch Pharmacol       Date:  2021-03-02       Impact factor: 3.000

Review 10.  Biologically Relevant Heterogeneity: Metrics and Practical Insights.

Authors:  Albert Gough; Andrew M Stern; John Maier; Timothy Lezon; Tong-Ying Shun; Chakra Chennubhotla; Mark E Schurdak; Steven A Haney; D Lansing Taylor
Journal:  SLAS Discov       Date:  2017-01-06       Impact factor: 3.341

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