Literature DB >> 20131398

Identification of B cells through negative gating-An example of the MIFlowCyt standard applied.

Darren Blimkie1, Edgardo S Fortuno, Francis Thommai, Lixin Xu, Elaine Fernandes, Juliet Crabtree, Annie Rein-Weston, Kirstin Jansen, R R Brinkman, Tobias R Kollmann.   

Abstract

Polychromatic flow cytometric analysis takes advantage of the increasing number of available fluorophores to positively identify and simultaneously assess multiple parameters in the same cell (1). Additional parameters may be analyzed through negative identification (i.e., through exclusion of particular stains or antibodies employed). In this report, we tested whether such negative-gating strategy would identify human B lymphocytes in innate immune phenotyping studies. To this end, B cells were identified as the negatively-stained subpopulation from the CD123 vs. CD11c plot of the CD14(neg-low), MHC II(high) human peripheral blood mononuclear cells. To test the specificity of this negative gating approach, we confirmed that negatively gated B cells indeed expressed CD19, the bona fide marker for human B cells. However, a small number of unidentified cells were contained in the negatively-gated B cells. Furthermore, a small percentage cells expressing markers used to identify monocytes and myeloid dendritic cells (mDC) coexpressed CD19. This identifies such negative B-cell gating approach as potentially problematic. When applied to the analysis of Toll-like receptors (TLR) stimulation experiments, we were however able to interpret the results, as B-cells respond to TLR stimulation in a qualitative different pattern as compared to monocytes and DC. This report is presented in a manner that is fully compliant with the Minimum Information about a Flow Cytometry Experiment (MIFlowCyt) standard, which was recently adopted by the International Society for Advancement of Cytometry (ISAC) (2) and incorporated in the publishing policies of Cytometry and other journals. We demonstrate how a MIFlowCyt-compliant report can be prepared with minimal effort, and yet provide the reader with a much clearer picture of the portrayed FCM experiment and data. Copyright 2010 International Society for Advancement of Cytometry.

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Year:  2010        PMID: 20131398      PMCID: PMC2878765          DOI: 10.1002/cyto.a.20862

Source DB:  PubMed          Journal:  Cytometry A        ISSN: 1552-4922            Impact factor:   4.355


  14 in total

1.  A role for Toll-like receptors in acquired immunity: up-regulation of TLR9 by BCR triggering in naive B cells and constitutive expression in memory B cells.

Authors:  Nadia L Bernasconi; Nobuyuki Onai; Antonio Lanzavecchia
Journal:  Blood       Date:  2003-01-30       Impact factor: 22.113

2.  Interpreting flow cytometry data: a guide for the perplexed.

Authors:  Leonore A Herzenberg; James Tung; Wayne A Moore; Leonard A Herzenberg; David R Parks
Journal:  Nat Immunol       Date:  2006-07       Impact factor: 25.606

3.  Quality assurance for polychromatic flow cytometry.

Authors:  Stephen P Perfetto; David Ambrozak; Richard Nguyen; Pratip Chattopadhyay; Mario Roederer
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

4.  Intracellular cytokine optimization and standard operating procedure.

Authors:  Laurie Lamoreaux; Mario Roederer; Richard Koup
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

5.  Toll-like receptor stimulation as a third signal required for activation of human naive B cells.

Authors:  Claudia R Ruprecht; Antonio Lanzavecchia
Journal:  Eur J Immunol       Date:  2006-04       Impact factor: 5.532

Review 6.  A chromatic explosion: the development and future of multiparameter flow cytometry.

Authors:  Pratip K Chattopadhyay; Carl-Magnus Hogerkorp; Mario Roederer
Journal:  Immunology       Date:  2008-12       Impact factor: 7.397

7.  Publishing flow cytometry data.

Authors:  D F Alvarez; K Helm; J Degregori; M Roederer; S Majka
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2009-11-13       Impact factor: 5.464

8.  The toll-like receptor repertoire of human B lymphocytes: inducible and selective expression of TLR9 and TLR10 in normal and transformed cells.

Authors:  Emer Bourke; Daniela Bosisio; Josee Golay; Nadia Polentarutti; Alberto Mantovani
Journal:  Blood       Date:  2003-04-10       Impact factor: 22.113

9.  Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.

Authors:  Chris F Taylor; Dawn Field; Susanna-Assunta Sansone; Jan Aerts; Rolf Apweiler; Michael Ashburner; Catherine A Ball; Pierre-Alain Binz; Molly Bogue; Tim Booth; Alvis Brazma; Ryan R Brinkman; Adam Michael Clark; Eric W Deutsch; Oliver Fiehn; Jennifer Fostel; Peter Ghazal; Frank Gibson; Tanya Gray; Graeme Grimes; John M Hancock; Nigel W Hardy; Henning Hermjakob; Randall K Julian; Matthew Kane; Carsten Kettner; Christopher Kinsinger; Eugene Kolker; Martin Kuiper; Nicolas Le Novère; Jim Leebens-Mack; Suzanna E Lewis; Phillip Lord; Ann-Marie Mallon; Nishanth Marthandan; Hiroshi Masuya; Ruth McNally; Alexander Mehrle; Norman Morrison; Sandra Orchard; John Quackenbush; James M Reecy; Donald G Robertson; Philippe Rocca-Serra; Henry Rodriguez; Heiko Rosenfelder; Javier Santoyo-Lopez; Richard H Scheuermann; Daniel Schober; Barry Smith; Jason Snape; Christian J Stoeckert; Keith Tipton; Peter Sterk; Andreas Untergasser; Jo Vandesompele; Stefan Wiemann
Journal:  Nat Biotechnol       Date:  2008-08       Impact factor: 54.908

10.  Standardizing the standards.

Authors:  John Quackenbush
Journal:  Mol Syst Biol       Date:  2006-02-21       Impact factor: 11.429

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  6 in total

1.  Variables to be controlled in the assessment of blood innate immune responses to Toll-like receptor stimulation.

Authors:  Darren Blimkie; Edgardo S Fortuno; Howard Yan; Patricia Cho; Kevin Ho; Stuart E Turvey; Arnaud Marchant; Stanislas Goriely; Tobias R Kollmann
Journal:  J Immunol Methods       Date:  2011-01-28       Impact factor: 2.303

2.  Single-cell analysis of innate cytokine responses to pattern recognition receptor stimulation in children across four continents.

Authors:  Philip J Cooper; Monika Esser; Arnaud Marchant; Kinga K Smolen; Bing Cai; Edgardo S Fortuno; Laura Gelinas; Martin Larsen; David P Speert; Mustapha Chamekh; Tobias R Kollmann
Journal:  J Immunol       Date:  2014-08-18       Impact factor: 5.422

3.  Altered innate immune development in HIV-exposed uninfected infants.

Authors:  Monika Esser; Tobias R Kollmann; Brian A Reikie; Rozanne C M Adams; Aleksandra Leligdowicz; Kevin Ho; Shalena Naidoo; Candice E Rusk; Corena de Beer; Wolfgang Preiser; Mark F Cotton; David P Speert
Journal:  J Acquir Immune Defic Syndr       Date:  2014-07-01       Impact factor: 3.731

4.  Ontogeny of Toll-like receptor mediated cytokine responses of South African infants throughout the first year of life.

Authors:  Brian A Reikie; Rozanne C M Adams; Candice E Ruck; Kevin Ho; Aleksandra Leligdowicz; Santoshan Pillay; Shalena Naidoo; Edgardo S Fortuno; Corena de Beer; Wolfgang Preiser; Mark F Cotton; David P Speert; Monika Esser; Tobias R Kollmann
Journal:  PLoS One       Date:  2012-09-13       Impact factor: 3.240

5.  Ontogeny of Toll-like receptor mediated cytokine responses of human blood mononuclear cells.

Authors:  Nathan P Corbett; Darren Blimkie; Kevin C Ho; Bing Cai; Darren P Sutherland; Arlene Kallos; Juliet Crabtree; Annie Rein-Weston; Pascal M Lavoie; Stuart E Turvey; Natalie R Hawkins; Steven G Self; Christopher B Wilson; Adeline M Hajjar; Edgardo S Fortuno; Tobias R Kollmann
Journal:  PLoS One       Date:  2010-11-30       Impact factor: 3.240

6.  Tranexamic acid alters the immunophenotype of phagocytes after lower limb surgery.

Authors:  Dominik F Draxler; Gryselda Hanafi; Saffanah Zahra; Fiona McCutcheon; Heidi Ho; Charithani B Keragala; Zikou Liu; David Daly; Thomas Painter; Sophia Wallace; Magdalena Plebanski; Paul S Myles; Robert L Medcalf
Journal:  Thromb J       Date:  2022-04-11
  6 in total

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