Literature DB >> 19907697

Intron sliding in tetraspanins.

Antonio Garcia-España1, Rob DeSalle.   

Abstract

Specific questions about intron evolution are precisely addressed applying a phylogenomic approach to suitable gene families. With this approach we have recently reported that the appearance of most human tetraspanins occurred in the common ancestor of vertebrates and coincides in nearly all cases with the concomitant acquisition of new introns. We observed that indels at the ends of the DNA exonic sequences with no involvement of the corresponding intronic sequence, were the cause of two discordant intron positions between orthologous tetraspanins. Here, we discuss a putative intron sliding occurrence in which a new acquired intron junction (intron 1a) in the ancestor of chordates could have been shifted to new positions (introns 1b and 1c) during the expansion of the tetraspanin family in vertebrates. Such a mechanism could be responsible for generating some of the variation of function in this important family of membrane spanning proteins.

Entities:  

Keywords:  exonization; indels; intron sliding; intronization; tetraspanins

Year:  2009        PMID: 19907697      PMCID: PMC2775230          DOI: 10.4161/cib.2.5.8760

Source DB:  PubMed          Journal:  Commun Integr Biol        ISSN: 1942-0889


  10 in total

1.  A new species of yunnanozoan with implications for deuterostome evolution.

Authors:  Degan Shu; Simon Conway Morris; Z F Zhang; J N Liu; Jian Han; Ling Chen; X L Zhang; K Yasui; Yong Li
Journal:  Science       Date:  2003-02-28       Impact factor: 47.728

2.  Genomics. Vertebrate genomes compared.

Authors:  S Blair Hedges; Sudhir Kumar
Journal:  Science       Date:  2002-08-23       Impact factor: 47.728

3.  Large-scale comparison of intron positions among animal, plant, and fungal genes.

Authors:  Alexei Fedorov; Amir Feisal Merican; Walter Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

Review 4.  Analysis of evolution of exon-intron structure of eukaryotic genes.

Authors:  Igor B Rogozin; Alexander V Sverdlov; Vladimir N Babenko; Eugene V Koonin
Journal:  Brief Bioinform       Date:  2005-06       Impact factor: 11.622

5.  Alternative splicing: a missing piece in the puzzle of intron gain.

Authors:  Rosa Tarrío; Francisco J Ayala; Francisco Rodríguez-Trelles
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-07       Impact factor: 11.205

6.  Origin of the tetraspanin uroplakins and their co-evolution with associated proteins: implications for uroplakin structure and function.

Authors:  Antonio Garcia-España; Pei-Jung Chung; Xiaoqian Zhao; Andy Lee; Angel Pellicer; Jun Yu; Tung-Tien Sun; Rob Desalle
Journal:  Mol Phylogenet Evol       Date:  2006-05-11       Impact factor: 4.286

7.  Intron "sliding" and the diversity of intron positions.

Authors:  A Stoltzfus; J M Logsdon; J D Palmer; W F Doolittle
Journal:  Proc Natl Acad Sci U S A       Date:  1997-09-30       Impact factor: 11.205

8.  Appearance of new tetraspanin genes during vertebrate evolution.

Authors:  Antonio Garcia-España; Pei-Jung Chung; Indra Neil Sarkar; Eric Stiner; Tung-Tien Sun; Rob Desalle
Journal:  Genomics       Date:  2008-02-21       Impact factor: 5.736

9.  Evidence that introns arose at proto-splice sites.

Authors:  N J Dibb; A J Newman
Journal:  EMBO J       Date:  1989-07       Impact factor: 11.598

10.  Intron evolution: testing hypotheses of intron evolution using the phylogenomics of tetraspanins.

Authors:  Antonio Garcia-España; Roso Mares; Tung-Tien Sun; Rob Desalle
Journal:  PLoS One       Date:  2009-03-05       Impact factor: 3.240

  10 in total
  4 in total

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Authors:  Leonor C Boavida; Peng Qin; Miranda Broz; Jörg D Becker; Sheila McCormick
Journal:  Plant Physiol       Date:  2013-08-14       Impact factor: 8.340

2.  Comprehensive Expression Profiling of Rice Tetraspanin Genes Reveals Diverse Roles During Development and Abiotic Stress.

Authors:  Balaji Mani; Manu Agarwal; Surekha Katiyar-Agarwal
Journal:  Front Plant Sci       Date:  2015-12-11       Impact factor: 5.753

3.  Classes of non-conventional tetraspanins defined by alternative splicing.

Authors:  Nikolas Hochheimer; Ricarda Sies; Anna C Aschenbrenner; Dirk Schneider; Thorsten Lang
Journal:  Sci Rep       Date:  2019-10-01       Impact factor: 4.379

4.  Arabidopsis Tetraspanins Facilitate Virus Infection via Membrane-Recognition GCCK/RP Motif and Cysteine Residues.

Authors:  Tingyu Zhu; Yanbiao Sun; Xu Chen
Journal:  Front Plant Sci       Date:  2022-03-03       Impact factor: 5.753

  4 in total

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